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FASTA Sequence PDB Format mmCIF Format
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6O7I

Cryo-em structure of csm-crrna-target rna ternary bigger complex in complex with ca4 in type iii-a crispr-cas system

PDB DOI: 10.2210/pdb6o7i/pdb

Classification: immune system/rna
Organism(s): Thermococcus Onnurineus (Strain Na1) , Synthetic Construct

Deposited: 2019-03-07
Deposition Author(s): Jia, N. , Patel, D.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

6o7i
Literature

Cryo-em structure of csm-crrna-target rna ternary bigger complex in complex with ca4 in type iii-a crispr-cas system

Jia, N. , Patel, D.J.

Primary Citation of Related Structures: 6O7I


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A) A 791 Thermococcus Onnurineus (Strain Na1) , Synthetic Construct MGSSHHHHHHSQDPMEIDELTALGGLLHDIGKPVQRAGLYSGDHSTQGARFLRDLAENTGRAEYELLSLFSEFHHKGHMKNDELMIRRIKELSPERFGLTMEDVLNALWIVYEADNLASGEREEGQPQASRPLYSVFNPGKAYPWAELDFEKELPVPGDVFSIRSQDYRELVKRLWEELSKAKLRSDRLLPVLEKYLTFVSSVTSEGNIISLYDHMRMTSAIALAMLRAGCTAEDVRSGRCRKEKRFLLIEGDFSGIQDFIYRVSGKGTLKYLRARSAYLELIGWDVVLEILSRLGLTRANVVFNAGGHFMIIAQNTPDAVKELEEIRAKAVEWLYREFESDLYLAIEWEPVSGREFGREGGKNLFAEARKRLKHKLTVRKLKRFGEIKGLFEHGHTERLAECPVCGRELPEGKLEPSASDPETKVCPTCNRLVSLGGNLPKLLGFGRTAKNDAGVLVEGPFSGFVPYLQGGRPVGEQILVKNTLNPGEIPESAQFVPYFVADYFKKDPKGGVATFEELSMASTGTRRLGVMKGDVDRLGEFFSSMDSPSKLATASRFMDYFFKGYIGAIIEGKFGYIIGDVPSLRDWPEEPDIVVVYAGGDAFFIVGAWDQIFELAFRVRRAFNAYTGGKLTLSVGLGYFDERTPIYRMADVVSERLDTAKDEGRNRVFVVGRSRPLDGKHKLSYEWNHYEELWRTYAPRIYAGNGRLKGKLESKKGLLWKLLEIRELYVRDPNDVRWAYLTAYLLGRHGLSDLFPELVGIDTKAVERKEPQPVYWVDGVLKIVLMAVRR
Csm2 B 187 Thermococcus Onnurineus (Strain Na1) , Synthetic Construct SMAYHQKHGGYGRGGYGRQDRPQVDASRLFGESPDVVGIKKMLEGKGKQWEAIQPYFDNVVREAKNFLEWSPNKRLANAVTVAAYLTSQGLKTNQVRKILDMARTTELKVKRGEGDIKDDLVKMRYLLAYTVGKATGQSKYSLDAFHRILDPMLEVLMGSPKKENFEKFYDFLQAVVAYHKFFGGGD
Csm2 J 187 Thermococcus Onnurineus (Strain Na1) , Synthetic Construct SMAYHQKHGGYGRGGYGRQDRPQVDASRLFGESPDVVGIKKMLEGKGKQWEAIQPYFDNVVREAKNFLEWSPNKRLANAVTVAAYLTSQGLKTNQVRKILDMARTTELKVKRGEGDIKDDLVKMRYLLAYTVGKATGQSKYSLDAFHRILDPMLEVLMGSPKKENFEKFYDFLQAVVAYHKFFGGGD
Csm3 C 291 Thermococcus Onnurineus (Strain Na1) , Synthetic Construct SMDRRFYGKIVIKGKIKAVTGLHIGSQRDISEIGGIDNPVIKDPHTGLPYIPGSSLKGRLRSLFEILVNSRLGEWREKYPSLANYSPGSCRPDNQENCGKFFNRKINRGWIHVCPDYETALACPVCRLFGASGKESNFPSRIIVRDAFLTKEWEEKWRAGEAITEAKIEVGIDRVTSQANPRTNERVVAGAEFEFEIIYNVENTTHWRDDIKNLLTAMALLEDSYLGGSGSRGYGKVKFIFDSFEFRPLDYYRTGKDEDIVSIDAREKSVSDILSGFDSLFSEVEGKLEAG
Csm3 D 291 Thermococcus Onnurineus (Strain Na1) , Synthetic Construct SMDRRFYGKIVIKGKIKAVTGLHIGSQRDISEIGGIDNPVIKDPHTGLPYIPGSSLKGRLRSLFEILVNSRLGEWREKYPSLANYSPGSCRPDNQENCGKFFNRKINRGWIHVCPDYETALACPVCRLFGASGKESNFPSRIIVRDAFLTKEWEEKWRAGEAITEAKIEVGIDRVTSQANPRTNERVVAGAEFEFEIIYNVENTTHWRDDIKNLLTAMALLEDSYLGGSGSRGYGKVKFIFDSFEFRPLDYYRTGKDEDIVSIDAREKSVSDILSGFDSLFSEVEGKLEAG
Csm3 K 291 Thermococcus Onnurineus (Strain Na1) , Synthetic Construct SMDRRFYGKIVIKGKIKAVTGLHIGSQRDISEIGGIDNPVIKDPHTGLPYIPGSSLKGRLRSLFEILVNSRLGEWREKYPSLANYSPGSCRPDNQENCGKFFNRKINRGWIHVCPDYETALACPVCRLFGASGKESNFPSRIIVRDAFLTKEWEEKWRAGEAITEAKIEVGIDRVTSQANPRTNERVVAGAEFEFEIIYNVENTTHWRDDIKNLLTAMALLEDSYLGGSGSRGYGKVKFIFDSFEFRPLDYYRTGKDEDIVSIDAREKSVSDILSGFDSLFSEVEGKLEAG
Csm4 E 289 Thermococcus Onnurineus (Strain Na1) , Synthetic Construct MPKFIAVKLIPKGPFRDIPRADTLFGAIGNAISAIHGQSAVEELVDAFVGGARISSAFPYSGDTYYLPKPLSVEPALEGILTGLDEEERYTTAKRLRKAKYLDLKNFELALRLRPFTIPEEIPYARVDVPRVVLDRVTQDSSIYFWEEIRFREKSGVYFLYSGPREVFDGYIAPAMRFLGDTGIGGKSTWGAGLFEVEFHEMKIDAPGSEYSVTLSNALPTKTPVLWRLLRKGGWSFGRRKPRMTFIAEGSIVKNDPGGMERLELGLSHEVYVYGLTFPLGVELPEGLE
Csm5 F 378 Thermococcus Onnurineus (Strain Na1) , Synthetic Construct MTERTLKVLSPLHIGTGNELTPVDIYPRENIIHVLDTERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKSMQIKEFIKLNGRPYIPGSSLKGAIRTAVLYKALKECXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRYEPKRDPMKALIVRDSKPVGRKHLAVYHVEVIGNPQPIPIWVEAIEPGAATDVEIHVDTEALRLNADYFNGLLWECLKERGEPGEVFEDFLWEAVDEFYTAVMKYETIEVQKFGRYTSQVRSFYASLEDHSGHVLRLGWGSGWLAMTIGLLLVEKGYKWENVRKKLGLGKKPGGSGFSREFPKTRRLADGMPMGWVVLEHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (38-MER) g 38 NA GUGGAAAGGCGGGCAGAGGCGGUUUGCGUAUUGGGCGC
RNA (40-MER) h 40 NA CCCUGGCGCCCAAUACGCAAACCGCCUCUGCCCGCGGGCG
RNA (5'-R(P*AP*AP*AP*A)-3') i 4 NA AAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-03-07
Deposition Author(s): Jia, N. , Patel, D.J.