6O0X
Conformational states of cas9-sgrna-dna ternary complex in the presence of magnesium
PDB DOI: 10.2210/pdb6o0x/pdb
Classification: HYDROLASE/RNA/DNA Organism(s): Streptococcus Pyogenes , Synthetic Construct
Deposited: 2019-02-17 Deposition Author(s): Chittori, S. , Clarke, R. , Merk, A. , Merrill, B.J. , Puppala, A.K. , Simonovic, M. , Subramaniam, S. , Zhu, X.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.28 Å
Conformational states of cas9-sgrna-dna ternary complex in the presence of magnesium
Chittori, S. , Clarke, R. , Merk, A. , Merrill, B.J. , Puppala, A.K. , Simonovic, M. , Subramaniam, S. , Zhu, X.
Primary Citation of Related Structures: 6O0X
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CRISPR-associated endonuclease Cas9/Csn1 | A | 1372 | Streptococcus Pyogenes , Synthetic Construct | GAASMDKKYSIGLDIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDHIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLSQLGGD |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| single guide RNA | b | 102 | NA | GGGGCGCAUAAAGAUGAGACGCGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUGC |
| 3' product of target strand DNA | c | 27 | NA | TCTCATCTTTATGCGCCTACGCACTGG |
| non-target strand DNA | d | 40 | NA | CCAGTGCGTAGGCGCATAAAGATGAGACGCTGGCGATTAG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-02-17 Deposition Author(s): Chittori, S. , Clarke, R. , Merk, A. , Merrill, B.J. , Puppala, A.K. , Simonovic, M. , Subramaniam, S. , Zhu, X.