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FASTA Sequence PDB Format mmCIF Format
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6NQA

Active state dot1l bound to the h2b-ubiquitinated nucleosome, 1-to-1 complex

PDB DOI: 10.2210/pdb6nqa/pdb

Classification: STRUCTURAL PROTEIN/TRANSFERASE/DNA
Organism(s): Homo Sapiens , Synthetic Construct , Xenopus Laevis

Deposited: 2019-01-19
Deposition Author(s): Hoffmann, N.A. , Wolberger, C. , Worden, E.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.54 Å

6nqa
Literature

Active state dot1l bound to the h2b-ubiquitinated nucleosome, 1-to-1 complex

Hoffmann, N.A. , Wolberger, C. , Worden, E.J.

Primary Citation of Related Structures: 6NQA


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
601 DNA Strand 1 i 146 NA TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT
601 DNA Strand 2 j 146 NA ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA

Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H4 F 102 Homo Sapiens , Synthetic Construct , Xenopus Laevis SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 B 102 Homo Sapiens , Synthetic Construct , Xenopus Laevis SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 G 129 Homo Sapiens , Synthetic Construct , Xenopus Laevis SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2A type 1 C 129 Homo Sapiens , Synthetic Construct , Xenopus Laevis SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 H 122 Homo Sapiens , Synthetic Construct , Xenopus Laevis AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTCYTSAK
Histone H2B 1.1 D 122 Homo Sapiens , Synthetic Construct , Xenopus Laevis AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTCYTSAK
Histone-lysine N-methyltransferase, H3 lysine-79 specific K 416 Homo Sapiens , Synthetic Construct , Xenopus Laevis GGEKLELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSWTGKPVSYYLHTIDRTILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPKK
Ubiquitin L 80 Homo Sapiens , Synthetic Construct , Xenopus Laevis GSHMMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGC
Histone H3.2 E 135 Homo Sapiens , Synthetic Construct , Xenopus Laevis ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFLTDLRFQSSAVLALQEASEAYLVALFEDTNLCAIHAKRVTILPKDIQLARRIRGERA
Histone H3.2 A 135 Homo Sapiens , Synthetic Construct , Xenopus Laevis ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFLTDLRFQSSAVLALQEASEAYLVALFEDTNLCAIHAKRVTILPKDIQLARRIRGERA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-01-19
Deposition Author(s): Hoffmann, N.A. , Wolberger, C. , Worden, E.J.