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FASTA Sequence PDB Format mmCIF Format
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6NNJ

Crystal structure of hiv-1 bg505 sosip.664 prefusion env trimer bound to ch31 scfv in complex with crystallization chaperones 3h109l fab and 35o22 scfv at 3.1 angstrom

PDB DOI: 10.2210/pdb6nnj/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2019-01-15
Deposition Author(s): Kwong, P.D. , Lai, Y.-T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.6 Å

6nnj
Literature

Crystal structure of hiv-1 bg505 sosip.664 prefusion env trimer bound to ch31 scfv in complex with crystallization chaperones 3h109l fab and 35o22 scfv at 3.1 angstrom

Kwong, P.D. , Lai, Y.-T.

Primary Citation of Related Structures: 6NNJ


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
35O22 scFv heavy chain D 153 Homo Sapiens , Human Immunodeficiency Virus 1 QGQLVQSGATTTKPGSSVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVNMTTDTEVPVTSFTSTGAAYMEIRNLTSDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSASTGGGGSGGGGSGGGGSGGGG
35O22 scFv light chain E 130 Homo Sapiens , Human Immunodeficiency Virus 1 SQSVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQSGGLVPRGSHHHHHHHH
Envelope glycoprotein gp120 G 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNAITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
3H109L Fab heavy chain H 244 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLQESGPGLVKPSETLSLTCTVSGGSISNYYWSWIRQSPGKGLEWIGYISDSESTNYNPSLKSRVIISVDTSKNQLSLKLNSVTAADSAIYYCARAQQGKRIYGMVSFGEFFYYYYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
3H109L Fab light chain L 217 Homo Sapiens , Human Immunodeficiency Virus 1 SVTSYVRPLSVALGETASISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPMQWKMHKSYSCQVTHEGSTVEKTVAPTECS
CH31 scFv heavy chain U 137 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLVQSGAAVRKPGASVTVSCKFAEDDDYSPYWVNPAPEHFIHFLRQAPGQQLEWLAWMNPTNGAVNYAWYLNGRVTATRDRSMTTAFLEVKSLRSDDTAVYYCARAQKRGRSEWAYAHWGQGTPVVVSSGGLVPR
CH31 scFv light chain V 117 Homo Sapiens , Human Immunodeficiency Virus 1 DIQMTQSPSSLSASLGDRVTITCQASRGIGKDLNWYQQKAGKAPKLLVSDASTLEGGVPSRFSGSGFHQNFSLTISSLQAEDVATYFCQQYETFGQGTKVDIGGGGSGGGGSGGGGS
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-01-15
Deposition Author(s): Kwong, P.D. , Lai, Y.-T.