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FASTA Sequence PDB Format mmCIF Format
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6NM6

Crystal structure of hiv-1 bg505 sosip.664 prefusion env trimer bound to n6 fr3-03 scfv in complex with crystallization chaperones 3h109l fab and 35o22 scfv at 3.2 angstrom

PDB DOI: 10.2210/pdb6nm6/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2019-01-10
Deposition Author(s): Kwong, P.D. , Lai, Y.-T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.739 Å

6nm6
Literature

Crystal structure of hiv-1 bg505 sosip.664 prefusion env trimer bound to n6 fr3-03 scfv in complex with crystallization chaperones 3h109l fab and 35o22 scfv at 3.2 angstrom

Kwong, P.D. , Lai, Y.-T.

Primary Citation of Related Structures: 6NM6


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
35O22 scFv heavy chain D 153 Homo Sapiens , Human Immunodeficiency Virus 1 QGQLVQSGATTTKPGSSVKISCKTSGYRFNFYHINWIRQTAGRGPEWMGWISPYSGDKNLAPAFQDRVNMTTDTEVPVTSFTSTGAAYMEIRNLTSDDTGTYFCAKGLLRDGSSTWLPYLWGQGTLLTVSSASTGGGGSGGGGSGGGGSGGGG
35O22 scFv light chain E 130 Homo Sapiens , Human Immunodeficiency Virus 1 SQSVLTQSASVSGSLGQSVTISCTGPNSVCCSHKSISWYQWPPGRAPTLIIYEDNERAPGISPRFSGYKSYWSAYLTISDLRPEDETTYYCCSYTHNSGCVFGTGTKVSVLGQSGGLVPRGSHHHHHHHH
Envelope glycoprotein gp120 G 481 Homo Sapiens , Human Immunodeficiency Virus 1 AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNAITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
3H109L Fab heavy chain H 244 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLQESGPGLVKPSETLSLTCTVSGGSISNYYWSWIRQSPGKGLEWIGYISDSESTNYNPSLKSRVIISVDTSKNQLSLKLNSVTAADSAIYYCARAQQGKRIYGMVSFGEFFYYYYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ
3H109L Fab light chain L 217 Homo Sapiens , Human Immunodeficiency Virus 1 SVTSYVRPLSVALGETASISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPMQWKMHKSYSCQVTHEGSTVEKTVAPTECS
N6 FR3-03 heavy chain U 145 Homo Sapiens , Human Immunodeficiency Virus 1 RAHLVQSGTAMKKPGASVRVSCQTSGYTFTAHILFWFRQAPGRGLEWVGWIKPQYGAVNFGGGFRDRVTLTRQLSQDPDDPDWGIAYMDIRGLKPDDTAVYYCARDRSYGDSSWALDAWGQGTTVVVSAGGLVPRGSHHHHHHHH
N6 FR3-03 light chain V 122 Homo Sapiens , Human Immunodeficiency Virus 1 YIHVTQSPSSLSVSIGDRVTINCQTSQGVGSDLHWYQHKPGRAPKLLIHHTSSVEDGVPSRFSGSGFHTSFNLTISDLQADDIATYYCQVLQFFGRGSRLHIKGGGGSGGGGSGGGGSGGGG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-01-10
Deposition Author(s): Kwong, P.D. , Lai, Y.-T.