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6NKZ

Ternary complex crystal structure of k289m variant of dna polymerase beta with "hot-spot sequence" with beta-gamma methylene dgtp

PDB DOI: 10.2210/pdb6nkz/pdb

Classification: transcription/dna
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2019-01-07
Deposition Author(s): Batra, V.K. , Wilson, S.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.01 Å

Literature

Ternary complex crystal structure of k289m variant of dna polymerase beta with "hot-spot sequence" with beta-gamma methylene dgtp

Batra, V.K. , Wilson, S.H.

Primary Citation of Related Structures: 6NKZ


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*CP*GP*AP*AP*CP*AP*AP*GP*CP*AP*TP*CP*AP*GP*C)-3') t 16 NA CCGAACAAGCATCAGC
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*TP*(2DT))-3') p 10 NA GCTGATGCTT
DNA (5'-D(P*TP*TP*CP*GP*G)-3') d 5 NA TTCGG

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA Polymerase Beta A 335 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSKRKAPQETLNGGITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDEGIKTLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEMGFTINEYTIRPLGVTGVAGEPLPVDSEKDIFDYIQWKYREPKDRSE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-01-07
Deposition Author(s): Batra, V.K. , Wilson, S.H.