PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6NFC

Bg505 md64 n332-gt5 sosip trimer in complex with bg18-like precursor hmp42 fragmentantigen binding and base-binding rm20a3 fragment antigen binding

PDB DOI: 10.2210/pdb6nfc/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2018-12-19
Deposition Author(s): Ozorowski, G. , Torres, J.L. , Ward, A.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.43 Å

Literature

Bg505 md64 n332-gt5 sosip trimer in complex with bg18-like precursor hmp42 fragmentantigen binding and base-binding rm20a3 fragment antigen binding

Ozorowski, G. , Torres, J.L. , Ward, A.B.

Primary Citation of Related Structures: 6NFC


Proteins
Molecule Chains Sequence Length Organism Sequence
base-binding RM20A3 fragment antigen binding heavy chain C 125 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLSLQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVSS
base-binding RM20A3 fragment antigen binding heavy chain J 125 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLSLQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVSS
base-binding RM20A3 fragment antigen binding heavy chain K 125 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLSLQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVSS
base-binding RM20A3 fragment antigen binding light chain D 128 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta ALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQADDEADYYCSAYAGRQTFYIFGGGTRLTVLGQPKASPTVTLFPPSSEEL
base-binding RM20A3 fragment antigen binding light chain M 128 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta ALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQADDEADYYCSAYAGRQTFYIFGGGTRLTVLGQPKASPTVTLFPPSSEEL
base-binding RM20A3 fragment antigen binding light chain N 128 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta ALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGLQADDEADYYCSAYAGRQTFYIFGGGTRLTVLGQPKASPTVTLFPPSSEEL
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120 A 481 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPKLRSMMRGEIKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPSNNTVKSIRIGPGQAFYYFGDVLGHVRMAHCNISKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSLILPCWIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120 E 481 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPKLRSMMRGEIKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPSNNTVKSIRIGPGQAFYYFGDVLGHVRMAHCNISKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSLILPCWIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120 F 481 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLQCTNYAPKLRSMMRGEIKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVIIRSENITNNAKNILVQLNTPVQINCTRPSNNTVKSIRIGPGQAFYYFGDVLGHVRMAHCNISKATWNETLGKVVKQLRKHFGNNTIIRFAQSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSLILPCWIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41 B 162 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGTKHHHHHH
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41 G 162 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGTKHHHHHH
HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41 I 162 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVSLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEPQQHLLKDTHWGIKQLQARVLAVEHYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGTKHHHHHH
BG18-like precursor HMP42 fragment antigen binding heavy chain H 128 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDRGREWELESYYYYYYMDVWGKGTTVTVSS
BG18-like precursor HMP42 fragment antigen binding light chain L 108 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta SYELTQPPSVSVSPGQTARITCSGDALPKQYAYWYQQKPGQAPVLVIYKDSERPSGIPERFSGSSSGTTVTLTISGVQAEDEADYYCQSADSSGTYVVFGGGTKLTVL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-12-19
Deposition Author(s): Ozorowski, G. , Torres, J.L. , Ward, A.B.