Cryo-em structure of singly-bound snf2h-nucleosome complex with snf2h bound at shl-2
PDB DOI: 10.2210/pdb6ne3/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): Homo Sapiens , Xenopus Laevis
Deposited: 2018-12-16 Deposition Author(s): Armache, J.-P. , Cheng, Y. , Gamarra, N. , Johnson, S.L. , Leonard, J.D. , Narlikar, G.N. , Wu, S.
Cryo-em structure of singly-bound snf2h-nucleosome complex with snf2h bound at shl-2
Armache, J.-P. , Cheng, Y. , Gamarra, N. , Johnson, S.L. , Leonard, J.D. , Narlikar, G.N. , Wu, S.
Primary Citation of Related Structures: 6NE3
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Histone H3.2 | A | 136 | Homo Sapiens , Xenopus Laevis | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H3.2 | E | 136 | Homo Sapiens , Xenopus Laevis | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
Histone H4 | B | 103 | Homo Sapiens , Xenopus Laevis | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H4 | F | 103 | Homo Sapiens , Xenopus Laevis | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
Histone H2A type 1 | C | 130 | Homo Sapiens , Xenopus Laevis | MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESAKSAKSK |
Histone H2A type 1 | G | 130 | Homo Sapiens , Xenopus Laevis | MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESAKSAKSK |
Histone H2B | D | 99 | Homo Sapiens , Xenopus Laevis | KKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
Histone H2B | H | 93 | Homo Sapiens , Xenopus Laevis | TRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA |
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 | W | 467 | Homo Sapiens , Xenopus Laevis | TRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNCLGQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQ |
Nucleic Acids / Hybrid | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
DNA (156-MER) | j | 156 | NA | CTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATT |
DNA (156-MER) | i | 156 | NA | AATACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAG |
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-12-16 Deposition Author(s): Armache, J.-P. , Cheng, Y. , Gamarra, N. , Johnson, S.L. , Leonard, J.D. , Narlikar, G.N. , Wu, S.