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FASTA Sequence PDB Format mmCIF Format
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6NDY

Vps4 with cyclic peptide bound in the central pore

PDB DOI: 10.2210/pdb6ndy/pdb

Classification: TRANSPORT PROTEIN/PEPTIDE
Organism(s): Saccharomyces Cerevisiae , Synthetic Construct

Deposited: 2018-12-14
Deposition Author(s): Dandey, V.P. , Fulcher, J.M. , Han, H. , Hill, C.P. , Kay, M.S. , Shen, P. , Sundquist, W.I.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

6ndy
Literature

Vps4 with cyclic peptide bound in the central pore

Dandey, V.P. , Fulcher, J.M. , Han, H. , Hill, C.P. , Kay, M.S. , Shen, P. , Sundquist, W.I.

Primary Citation of Related Structures: 6NDY


Proteins
Molecule Chains Sequence Length Organism Sequence
Vacuolar protein sorting-associated protein 4 A 337 Saccharomyces Cerevisiae , Synthetic Construct QEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEGN
Vacuolar protein sorting-associated protein 4 B 337 Saccharomyces Cerevisiae , Synthetic Construct QEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEGN
Vacuolar protein sorting-associated protein 4 C 337 Saccharomyces Cerevisiae , Synthetic Construct QEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEGN
Vacuolar protein sorting-associated protein 4 D 337 Saccharomyces Cerevisiae , Synthetic Construct QEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEGN
Vacuolar protein sorting-associated protein 4 E 337 Saccharomyces Cerevisiae , Synthetic Construct QEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEGN
Designed Cyclic Peptide G 30 Saccharomyces Cerevisiae , Synthetic Construct GGDEIVNKVLGGSSGGXXXXXXXXGGKGCK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-12-14
Deposition Author(s): Dandey, V.P. , Fulcher, J.M. , Han, H. , Hill, C.P. , Kay, M.S. , Shen, P. , Sundquist, W.I.