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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6NC3

Amc011 v4.2 sosip env trimer in complex with fusion peptide targeting antibody vrc34 fragment antigen binding

PDB DOI: 10.2210/pdb6nc3/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2018-12-10
Deposition Author(s): Cottrell, C.A. , Ozorowski, G. , Torres, J.L. , Ward, A.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.5 Å

6nc3
Literature

Amc011 v4.2 sosip env trimer in complex with fusion peptide targeting antibody vrc34 fragment antigen binding

Cottrell, C.A. , Ozorowski, G. , Torres, J.L. , Ward, A.B.

Primary Citation of Related Structures: 6NC3


Proteins
Molecule Chains Sequence Length Organism Sequence
HIV-1 Env AMC011 v4.2 SOSIP gp120 A 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
HIV-1 Env AMC011 v4.2 SOSIP gp120 C 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
HIV-1 Env AMC011 v4.2 SOSIP gp120 D 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
HIV-1 Env AMC011 v4.2 SOSIP gp120 E 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
HIV-1 Env AMC011 v4.2 SOSIP gp120 F 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
HIV-1 Env AMC011 v4.2 SOSIP gp120 G 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
HIV-1 Env AMC011 v4.2 SOSIP gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
HIV-1 Env AMC011 v4.2 SOSIP gp41 I 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
HIV-1 Env AMC011 v4.2 SOSIP gp41 J 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
HIV-1 Env AMC011 v4.2 SOSIP gp41 K 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
HIV-1 Env AMC011 v4.2 SOSIP gp41 M 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
HIV-1 Env AMC011 v4.2 SOSIP gp41 N 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
Monoclonal antibody VRC34.01 fragment antigen binding heavy chain H 222 Homo Sapiens , Human Immunodeficiency Virus 1 QEVLVQSGAEVKKPGASVKVSCRAFGYTFTGNALHWVRQAPGQGLEWLGWINPHSGDTTTSQKFQGRVYMTRDKSINTAFLDVTRLTSDDTGIYYCARDKYYGNEAVGMDVWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
Monoclonal antibody VRC34.01 fragment antigen binding heavy chain O 222 Homo Sapiens , Human Immunodeficiency Virus 1 QEVLVQSGAEVKKPGASVKVSCRAFGYTFTGNALHWVRQAPGQGLEWLGWINPHSGDTTTSQKFQGRVYMTRDKSINTAFLDVTRLTSDDTGIYYCARDKYYGNEAVGMDVWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
Monoclonal antibody VRC34.01 fragment antigen binding heavy chain P 222 Homo Sapiens , Human Immunodeficiency Virus 1 QEVLVQSGAEVKKPGASVKVSCRAFGYTFTGNALHWVRQAPGQGLEWLGWINPHSGDTTTSQKFQGRVYMTRDKSINTAFLDVTRLTSDDTGIYYCARDKYYGNEAVGMDVWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
Monoclonal antibody VRC34.01 fragment antigen binding heavy chain Q 222 Homo Sapiens , Human Immunodeficiency Virus 1 QEVLVQSGAEVKKPGASVKVSCRAFGYTFTGNALHWVRQAPGQGLEWLGWINPHSGDTTTSQKFQGRVYMTRDKSINTAFLDVTRLTSDDTGIYYCARDKYYGNEAVGMDVWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
Monoclonal antibody VRC34.01 fragment antigen binding heavy chain R 222 Homo Sapiens , Human Immunodeficiency Virus 1 QEVLVQSGAEVKKPGASVKVSCRAFGYTFTGNALHWVRQAPGQGLEWLGWINPHSGDTTTSQKFQGRVYMTRDKSINTAFLDVTRLTSDDTGIYYCARDKYYGNEAVGMDVWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
Monoclonal antibody VRC34.01 fragment antigen binding heavy chain S 222 Homo Sapiens , Human Immunodeficiency Virus 1 QEVLVQSGAEVKKPGASVKVSCRAFGYTFTGNALHWVRQAPGQGLEWLGWINPHSGDTTTSQKFQGRVYMTRDKSINTAFLDVTRLTSDDTGIYYCARDKYYGNEAVGMDVWGQGTSVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEP
Monoclonal antibody VRC34.01 fragment antigen binding light chain L 210 Homo Sapiens , Human Immunodeficiency Virus 1 IQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPSRFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNA
Monoclonal antibody VRC34.01 fragment antigen binding light chain T 210 Homo Sapiens , Human Immunodeficiency Virus 1 IQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPSRFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNA
Monoclonal antibody VRC34.01 fragment antigen binding light chain U 210 Homo Sapiens , Human Immunodeficiency Virus 1 IQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPSRFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNA
Monoclonal antibody VRC34.01 fragment antigen binding light chain V 210 Homo Sapiens , Human Immunodeficiency Virus 1 IQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPSRFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNA
Monoclonal antibody VRC34.01 fragment antigen binding light chain W 210 Homo Sapiens , Human Immunodeficiency Virus 1 IQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPSRFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNA
Monoclonal antibody VRC34.01 fragment antigen binding light chain X 210 Homo Sapiens , Human Immunodeficiency Virus 1 IQLTQSPSFLSASVGDKVTITCRASQGVRNELAWYQQKPGKAPNLLIYYASTLQSGVPSRFSATGSGTHFTLTVSSLQPEDFATYFCQHMSSYPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-12-10
Deposition Author(s): Cottrell, C.A. , Ozorowski, G. , Torres, J.L. , Ward, A.B.