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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6NC2

Amc011 v4.2 sosip env trimer in complex with fusion peptide targeting antibody acs202 fragment antigen binding

PDB DOI: 10.2210/pdb6nc2/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2018-12-10
Deposition Author(s): Copps, J. , Cottrell, C.A. , Ozorowski, G. , Ward, A.B. , Wilson, I.A. , Yuan, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 5.2 Å

6nc2
Literature

Amc011 v4.2 sosip env trimer in complex with fusion peptide targeting antibody acs202 fragment antigen binding

Copps, J. , Cottrell, C.A. , Ozorowski, G. , Ward, A.B. , Wilson, I.A. , Yuan, M.

Primary Citation of Related Structures: 6NC2


Proteins
Molecule Chains Sequence Length Organism Sequence
AMC011 v4.2 SOSIP gp120 A 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
AMC011 v4.2 SOSIP gp120 C 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
AMC011 v4.2 SOSIP gp120 D 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
AMC011 v4.2 SOSIP gp120 E 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
AMC011 v4.2 SOSIP gp120 F 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
AMC011 v4.2 SOSIP gp120 G 512 Homo Sapiens , Human Immunodeficiency Virus 1 MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAEQLWVTVYYGVPVWKEATTTLFCASDARAYDTEVRNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDLRNATNTNATNTTSSSRGTMEGGEIKNCSFNITTSMRDKVQKEYALFYKLDVVPIKNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSANFTDNAKIIIVQLNKSVEINCTRPNNNTRKSIHIGPGRWFYTTGEIIGDIRQAHCNISGTKWNDTLKQIVVKLKEQFGNKTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSTQLFNSTWNDGSNYTGTIVLPCRIKQIVNMWQEVGKAMYAPPIKGQIRCSSNITGLILIRDGGKNRSENTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGIAPTKCKRRVVQRRRRRR
AMC011 v4.2 SOSIP gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
AMC011 v4.2 SOSIP gp41 I 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
AMC011 v4.2 SOSIP gp41 J 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
AMC011 v4.2 SOSIP gp41 K 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
AMC011 v4.2 SOSIP gp41 M 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
AMC011 v4.2 SOSIP gp41 N 153 Homo Sapiens , Human Immunodeficiency Virus 1 AVGIGAVFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICCTAVPWNTSWSNKSYNQIWNNMTWMEWEREIDNYTSLIYTLIEDSQNQQEKNEQELLELD
Monoclonal antibody ACS202 fragment antigen binding heavy chain H 254 Homo Sapiens , Human Immunodeficiency Virus 1 MELGLRWVFLVAILEVHSQVQLVESGGGVVQPGGSLRLSCAASGFAFKDFGMHWVRQAPGKGLEWVAVIGGGHGQHQSYSESVKGRFAITRDNEKNKLYLHMDRLRTEDTAVYYCAKDRLGRPWNIGGRLVYYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Monoclonal antibody ACS202 fragment antigen binding heavy chain O 254 Homo Sapiens , Human Immunodeficiency Virus 1 MELGLRWVFLVAILEVHSQVQLVESGGGVVQPGGSLRLSCAASGFAFKDFGMHWVRQAPGKGLEWVAVIGGGHGQHQSYSESVKGRFAITRDNEKNKLYLHMDRLRTEDTAVYYCAKDRLGRPWNIGGRLVYYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Monoclonal antibody ACS202 fragment antigen binding heavy chain P 254 Homo Sapiens , Human Immunodeficiency Virus 1 MELGLRWVFLVAILEVHSQVQLVESGGGVVQPGGSLRLSCAASGFAFKDFGMHWVRQAPGKGLEWVAVIGGGHGQHQSYSESVKGRFAITRDNEKNKLYLHMDRLRTEDTAVYYCAKDRLGRPWNIGGRLVYYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Monoclonal antibody ACS202 fragment antigen binding heavy chain Q 254 Homo Sapiens , Human Immunodeficiency Virus 1 MELGLRWVFLVAILEVHSQVQLVESGGGVVQPGGSLRLSCAASGFAFKDFGMHWVRQAPGKGLEWVAVIGGGHGQHQSYSESVKGRFAITRDNEKNKLYLHMDRLRTEDTAVYYCAKDRLGRPWNIGGRLVYYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Monoclonal antibody ACS202 fragment antigen binding heavy chain R 254 Homo Sapiens , Human Immunodeficiency Virus 1 MELGLRWVFLVAILEVHSQVQLVESGGGVVQPGGSLRLSCAASGFAFKDFGMHWVRQAPGKGLEWVAVIGGGHGQHQSYSESVKGRFAITRDNEKNKLYLHMDRLRTEDTAVYYCAKDRLGRPWNIGGRLVYYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Monoclonal antibody ACS202 fragment antigen binding heavy chain S 254 Homo Sapiens , Human Immunodeficiency Virus 1 MELGLRWVFLVAILEVHSQVQLVESGGGVVQPGGSLRLSCAASGFAFKDFGMHWVRQAPGKGLEWVAVIGGGHGQHQSYSESVKGRFAITRDNEKNKLYLHMDRLRTEDTAVYYCAKDRLGRPWNIGGRLVYYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Monoclonal antibody ACS202 fragment antigen binding kappa chain L 233 Homo Sapiens , Human Immunodeficiency Virus 1 MGWSCIILFLVATATGVHCAIRMTQSPSSLSASVGDRVTITCQASQDIKKSLNWYRQKPGKAPELLIHDASILQTGVPSAFTASGSGTHFSFVINKLQPEDVGTYFCQEYENLQFTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Monoclonal antibody ACS202 fragment antigen binding kappa chain T 233 Homo Sapiens , Human Immunodeficiency Virus 1 MGWSCIILFLVATATGVHCAIRMTQSPSSLSASVGDRVTITCQASQDIKKSLNWYRQKPGKAPELLIHDASILQTGVPSAFTASGSGTHFSFVINKLQPEDVGTYFCQEYENLQFTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Monoclonal antibody ACS202 fragment antigen binding kappa chain U 233 Homo Sapiens , Human Immunodeficiency Virus 1 MGWSCIILFLVATATGVHCAIRMTQSPSSLSASVGDRVTITCQASQDIKKSLNWYRQKPGKAPELLIHDASILQTGVPSAFTASGSGTHFSFVINKLQPEDVGTYFCQEYENLQFTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Monoclonal antibody ACS202 fragment antigen binding kappa chain V 233 Homo Sapiens , Human Immunodeficiency Virus 1 MGWSCIILFLVATATGVHCAIRMTQSPSSLSASVGDRVTITCQASQDIKKSLNWYRQKPGKAPELLIHDASILQTGVPSAFTASGSGTHFSFVINKLQPEDVGTYFCQEYENLQFTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Monoclonal antibody ACS202 fragment antigen binding kappa chain W 233 Homo Sapiens , Human Immunodeficiency Virus 1 MGWSCIILFLVATATGVHCAIRMTQSPSSLSASVGDRVTITCQASQDIKKSLNWYRQKPGKAPELLIHDASILQTGVPSAFTASGSGTHFSFVINKLQPEDVGTYFCQEYENLQFTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Monoclonal antibody ACS202 fragment antigen binding kappa chain X 233 Homo Sapiens , Human Immunodeficiency Virus 1 MGWSCIILFLVATATGVHCAIRMTQSPSSLSASVGDRVTITCQASQDIKKSLNWYRQKPGKAPELLIHDASILQTGVPSAFTASGSGTHFSFVINKLQPEDVGTYFCQEYENLQFTFGPGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-12-10
Deposition Author(s): Copps, J. , Cottrell, C.A. , Ozorowski, G. , Ward, A.B. , Wilson, I.A. , Yuan, M.