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6N4Q

Cryoem structure of nav1.7 vsd2 (actived state) in complex with the gating modifier toxin protx2

PDB DOI: 10.2210/pdb6n4q/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2018-11-20
Deposition Author(s): Arthur, C.P. , Ciferri, C. , Estevez, A. , Koth, C.M. , Payandeh, J. , Rohou, A. , Xu, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

6n4q
Literature

Cryoem structure of nav1.7 vsd2 (actived state) in complex with the gating modifier toxin protx2

Arthur, C.P. , Ciferri, C. , Estevez, A. , Koth, C.M. , Payandeh, J. , Rohou, A. , Xu, H.

Primary Citation of Related Structures: 6N4Q


Proteins
Molecule Chains Sequence Length Organism Sequence
Nav1.7 VSD2-NavAb chimera A 288 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MDYKDDDDKGSLVPRGSHMYLRITNIVESSFFTKFIIYLIVLNTLFMAMEHHPMTEEFKNVLAIGNLVFTGIFAIEIILRIYVHRISFFKDPWSLFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTSLKN
Nav1.7 VSD2-NavAb chimera B 288 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MDYKDDDDKGSLVPRGSHMYLRITNIVESSFFTKFIIYLIVLNTLFMAMEHHPMTEEFKNVLAIGNLVFTGIFAIEIILRIYVHRISFFKDPWSLFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTSLKN
Nav1.7 VSD2-NavAb chimera C 288 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MDYKDDDDKGSLVPRGSHMYLRITNIVESSFFTKFIIYLIVLNTLFMAMEHHPMTEEFKNVLAIGNLVFTGIFAIEIILRIYVHRISFFKDPWSLFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTSLKN
Nav1.7 VSD2-NavAb chimera D 288 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MDYKDDDDKGSLVPRGSHMYLRITNIVESSFFTKFIIYLIVLNTLFMAMEHHPMTEEFKNVLAIGNLVFTGIFAIEIILRIYVHRISFFKDPWSLFDSLIVTLSLVELFLADVEGLSVLRSFRLLRVFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELIKTSLKN
Beta/omega-theraphotoxin-Tp2a E 30 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) YCQKWMWTCDSERKCCEGMVCRLWCKKKLW
Beta/omega-theraphotoxin-Tp2a F 30 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) YCQKWMWTCDSERKCCEGMVCRLWCKKKLW
Beta/omega-theraphotoxin-Tp2a G 30 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) YCQKWMWTCDSERKCCEGMVCRLWCKKKLW
Beta/omega-theraphotoxin-Tp2a H 30 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) YCQKWMWTCDSERKCCEGMVCRLWCKKKLW
Fab light chain I 215 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EIVLTQSPALMAASPGEKVTITCSVSLSISSSNLFWYQQKSETSPKPWIYGTSKLASGVPVRFSGSGSGTSYSLTISSMEAEDAATYYCQQWSSHSFTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Fab light chain K 215 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EIVLTQSPALMAASPGEKVTITCSVSLSISSSNLFWYQQKSETSPKPWIYGTSKLASGVPVRFSGSGSGTSYSLTISSMEAEDAATYYCQQWSSHSFTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Fab heavy chain J 228 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EVQLVESGGGLVKPGGSLKLSCAASGFTFSNYAMSWVRQTPEKRLEWVATISNGGRYTYYPDSVKGRFTISRDNAKNSLYLQMSSLRSEDTAMYYCARHLYRYDVGGALDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKP
Fab heavy chain L 228 Rhinolophus Landeri , Salmonella Enterica , Enterobacter Aerogenes , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EVQLVESGGGLVKPGGSLKLSCAASGFTFSNYAMSWVRQTPEKRLEWVATISNGGRYTYYPDSVKGRFTISRDNAKNSLYLQMSSLRSEDTAMYYCARHLYRYDVGGALDYWGQGTSVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-11-20
Deposition Author(s): Arthur, C.P. , Ciferri, C. , Estevez, A. , Koth, C.M. , Payandeh, J. , Rohou, A. , Xu, H.