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FASTA Sequence PDB Format mmCIF Format
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6N1W

Cryo-em structure at 4.2 a resolution of vaccine-elicited antibody dfph-a.15 in complex with hiv-1 env bg505 ds-sosip, and antibodies vrc03 and pgt122

PDB DOI: 10.2210/pdb6n1w/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2018-11-12
Deposition Author(s): Acharya, P. , Kwong, P.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.2 Å

Literature

Cryo-em structure at 4.2 a resolution of vaccine-elicited antibody dfph-a.15 in complex with hiv-1 env bg505 ds-sosip, and antibodies vrc03 and pgt122

Acharya, P. , Kwong, P.D.

Primary Citation of Related Structures: 6N1W


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp120 2 473 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
Envelope glycoprotein gp120 C 473 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
DFPH-a.15 heavy chain 3 224 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQVSGPGVVRPSETLSLTCEVSSGSTSRDFFYWSWVRQTPGKGLEWIGGMYSNSEETNHNPSLKSRVIISKDTSKNEFSLRLTSVTAADTAVYFCSSRAKIYYSASYSGGRIDVWGPGLLVTVSSASTKGPSVFPLAPSSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEI
DFPH-a.15 heavy chain H 224 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQVSGPGVVRPSETLSLTCEVSSGSTSRDFFYWSWVRQTPGKGLEWIGGMYSNSEETNHNPSLKSRVIISKDTSKNEFSLRLTSVTAADTAVYFCSSRAKIYYSASYSGGRIDVWGPGLLVTVSSASTKGPSVFPLAPSSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEI
DFPH-a.15 Light chain 4 212 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIQMTQSPSSLSASIGDRVTVTCRASQGIDKDLSWFQQKPGKAPTLLIYTASTLQTGVSSRFSGSGSGTDFSLTINNLQPEDVATYFCQQDFSFPLTFGGGTKVDFKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRG
DFPH-a.15 Light chain L 212 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIQMTQSPSSLSASIGDRVTVTCRASQGIDKDLSWFQQKPGKAPTLLIYTASTLQTGVSSRFSGSGSGTDFSLTINNLQPEDVATYFCQQDFSFPLTFGGGTKVDFKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRG
PGT122 Heavy chain 5 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 Heavy chain M 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 Light chain 6 105 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta TFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
PGT122 Light chain N 105 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta TFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
VRC03 Light chain 7 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
VRC03 Light chain R 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
VRC03 Heavy chain 8 128 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVV
VRC03 Heavy chain Q 128 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVV
Envelope glycoprotein gp41 A 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-11-12
Deposition Author(s): Acharya, P. , Kwong, P.D.