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FASTA Sequence PDB Format mmCIF Format
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6N1V

Cryo-em structure at 4.0 a resolution of vaccine-elicited antibody a12v163-a.01 in complex with hiv-1 env bg505 ds-sosip, and antibodies vrc03 and pgt122

PDB DOI: 10.2210/pdb6n1v/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2018-11-12
Deposition Author(s): Acharya, P. , Kwong, P.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.0 Å

6n1v
Literature

Cryo-em structure at 4.0 a resolution of vaccine-elicited antibody a12v163-a.01 in complex with hiv-1 env bg505 ds-sosip, and antibodies vrc03 and pgt122

Acharya, P. , Kwong, P.D.

Primary Citation of Related Structures: 6N1V


Proteins
Molecule Chains Sequence Length Organism Sequence
A12V163-a.01 Heavy chain 3 225 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQESGPGLVKPSETLSLTCGVSGGSISDAYYWSWIRQSPGKRLEWIGYIFGSNGGTRYNPSLRSRVSISIDTSKNQLSLKLTSVTAADTAVYYCVREGVPTEATTGDHWGQGVPVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTC
A12V163-a.01 Heavy chain 1 225 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLQESGPGLVKPSETLSLTCGVSGGSISDAYYWSWIRQSPGKRLEWIGYIFGSNGGTRYNPSLRSRVSISIDTSKNQLSLKLTSVTAADTAVYYCVREGVPTEATTGDHWGQGVPVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTC
VRC03 Light chain H 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
A12V163-a.01 Light chain 4 215 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QFVLTQPPSMSGAPGQRVTISCTGTNSNIGVNYVQWYQQFPGTAPKLLIYENYKRPSGISDRFSGSQSGSSASLTITGLQSEDEADYYCQSYDISLGAHVFGSGTELTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAEC
A12V163-a.01 Light chain 2 215 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QFVLTQPPSMSGAPGQRVTISCTGTNSNIGVNYVQWYQQFPGTAPKLLIYENYKRPSGISDRFSGSQSGSSASLTITGLQSEDEADYYCQSYDISLGAHVFGSGTELTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAEC
A12V163-a.01 Light chain L 215 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QFVLTQPPSMSGAPGQRVTISCTGTNSNIGVNYVQWYQQFPGTAPKLLIYENYKRPSGISDRFSGSQSGSSASLTITGLQSEDEADYYCQSYDISLGAHVFGSGTELTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVEVAWKADGSAVNAGVETTKPSKQSNNKYAASSYLSLTSDQWKSHKSYSCQVTHEGSTVEKTVAPAEC
Envelope glycoprotein gp120 B 473 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
PGT122 Light chain A 107 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
Envelope glycoprotein gp120 C 473 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
VRC03 Heavy chain F 129 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWCQGTVVVVS
Envelope glycoprotein gp41 E 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
PGT122 Heavy chain Y 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 Heavy chain X 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 Heavy chain M 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 Light chain Z 107 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
PGT122 Light chain N 107 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
VRC03 Heavy chain G 129 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWCQGTVVVVS
VRC03 Heavy chain Q 129 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWCQGTVVVVS
VRC03 Light chain I 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
VRC03 Light chain R 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-11-12
Deposition Author(s): Acharya, P. , Kwong, P.D.