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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6MPH

Cryo-em structure at 3.8 a resolution of hiv-1 fusion peptide-directed antibody, df1w-a.01, elicited by vaccination of rhesus macaques, in complex with stabilized hiv-1 env bg505 ds-sosip, which was also bound to antibodies vrc03 and pgt122

PDB DOI: 10.2210/pdb6mph/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2018-10-06
Deposition Author(s): Acharya, P. , Kwong, P.D. , Xu, K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.8 Å

6mph
Literature

Cryo-em structure at 3.8 a resolution of hiv-1 fusion peptide-directed antibody, df1w-a.01, elicited by vaccination of rhesus macaques, in complex with stabilized hiv-1 env bg505 ds-sosip, which was also bound to antibodies vrc03 and pgt122

Acharya, P. , Kwong, P.D. , Xu, K.

Primary Citation of Related Structures: 6MPH


Proteins
Molecule Chains Sequence Length Organism Sequence
DF1W-a.01 heavy chain 1 118 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVESGPGLVRPSETLSLTCAVSGASIRTKAWWSWIRQPPGKGLEWIGYVSGGWDLPNYNPSLKNRVIILKDTSLNQFSLRLTSVTAADTALYYCAREGPEDFDVWGPGFLVTVSS
DF1W-a.01 heavy chain 3 118 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVESGPGLVRPSETLSLTCAVSGASIRTKAWWSWIRQPPGKGLEWIGYVSGGWDLPNYNPSLKNRVIILKDTSLNQFSLRLTSVTAADTALYYCAREGPEDFDVWGPGFLVTVSS
VRC03 Light Chain H 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
DF1W-a.01 Light chain 2 112 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DVVMTQSPLSLSITPGQPASISCRSSQSLVHSDGKTYLSWYQQKPGQPPRLLIYQVSNWYSGVPDRFSGSGTGTNFTLKISRVEAADVGVYYCGQGVHLPRTFGQGTKVDIK
DF1W-a.01 Light chain 4 112 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DVVMTQSPLSLSITPGQPASISCRSSQSLVHSDGKTYLSWYQQKPGQPPRLLIYQVSNWYSGVPDRFSGSGTGTNFTLKISRVEAADVGVYYCGQGVHLPRTFGQGTKVDIK
DF1W-a.01 Light chain L 112 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DVVMTQSPLSLSITPGQPASISCRSSQSLVHSDGKTYLSWYQQKPGQPPRLLIYQVSNWYSGVPDRFSGSGTGTNFTLKISRVEAADVGVYYCGQGVHLPRTFGQGTKVDIK
Envelope glycoprotein gp41 6 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 E 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
PGT122 Light Chain A 107 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
Envelope glycoprotein gp120 B 473 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
Envelope glycoprotein gp120 C 473 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
PGT122 heavy chain M 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 heavy chain X 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 heavy chain Y 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 Light Chain N 107 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
PGT122 Light Chain Z 107 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
VRC03 Heavy chain Q 227 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
VRC03 Heavy chain F 227 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
VRC03 Heavy chain G 227 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
VRC03 Light Chain R 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
VRC03 Light Chain I 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-10-06
Deposition Author(s): Acharya, P. , Kwong, P.D. , Xu, K.