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FASTA Sequence PDB Format mmCIF Format
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6MPG

Cryo-em structure at 3.2 a resolution of hiv-1 fusion peptide-directed antibody, a12v163-b.01, elicited by vaccination of rhesus macaques, in complex with stabilized hiv-1 env bg505 ds-sosip, which was also bound to antibodies vrc03 and pgt122

PDB DOI: 10.2210/pdb6mpg/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2018-10-06
Deposition Author(s): Acharya, P. , Kwong, P.D.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

6mpg
Literature

Cryo-em structure at 3.2 a resolution of hiv-1 fusion peptide-directed antibody, a12v163-b.01, elicited by vaccination of rhesus macaques, in complex with stabilized hiv-1 env bg505 ds-sosip, which was also bound to antibodies vrc03 and pgt122

Acharya, P. , Kwong, P.D.

Primary Citation of Related Structures: 6MPG


Proteins
Molecule Chains Sequence Length Organism Sequence
A12V163-b.01 Light Chain B 113 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIVMTQSPDSLAVSLGERVTLNCKSSQSLLASSNNKNYLAWYYQKPGQAPKLLIYWASTRESGVPNRFSGSGSGSDFTLTISGLQAEDVAVYYCQQYYTTPLTFGGGTKVEIK
A12V163-b.01 Light Chain 4 113 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIVMTQSPDSLAVSLGERVTLNCKSSQSLLASSNNKNYLAWYYQKPGQAPKLLIYWASTRESGVPNRFSGSGSGSDFTLTISGLQAEDVAVYYCQQYYTTPLTFGGGTKVEIK
A12V163-b.01 Light Chain Y 113 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIVMTQSPDSLAVSLGERVTLNCKSSQSLLASSNNKNYLAWYYQKPGQAPKLLIYWASTRESGVPNRFSGSGSGSDFTLTISGLQAEDVAVYYCQQYYTTPLTFGGGTKVEIK
Envelope glycoprotein gp41 U 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 A 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp120 V 473 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
Envelope glycoprotein gp120 2 473 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
Envelope glycoprotein gp120 C 473 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSACTQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQCMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRV
A12V163-b.01 Heavy Chain W 117 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EVQLVESGGGLAKPGGSLRLSCAASGFTFSDYYMDWVRQAPGKGLEWVSRISNSGITWYTDSVRGRFTIFRDNAKNTLYLQMNSLRAEDTAVYYCTKESAAAIGHYWGQGVLVTVSS
A12V163-b.01 Heavy Chain 3 117 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EVQLVESGGGLAKPGGSLRLSCAASGFTFSDYYMDWVRQAPGKGLEWVSRISNSGITWYTDSVRGRFTIFRDNAKNTLYLQMNSLRAEDTAVYYCTKESAAAIGHYWGQGVLVTVSS
A12V163-b.01 Heavy Chain X 117 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EVQLVESGGGLAKPGGSLRLSCAASGFTFSDYYMDWVRQAPGKGLEWVSRISNSGITWYTDSVRGRFTIFRDNAKNTLYLQMNSLRAEDTAVYYCTKESAAAIGHYWGQGVLVTVSS
PGT122 Heavy chain M 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 Heavy chain 5 132 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVHLQESGPGLVKPSETLSLTCNVSGTLVRDNYWSWIRQPLGKQPEWIGYVHDSGDTNYNPSLKSRVHLSLDKSKNLVSLRLTGVTAADSAIYYCATTKHGRRIYGVVAFKEWFTYFYMDVWGKGTSVTVSS
PGT122 Light chain N 107 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
PGT122 Light chain 6 107 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta APTFVSVAPGQTARITCGEESLGSRSVIWYQQRPGQAPSLIIYNNNDRPSGIPDRFSGSPGSTFGTTATLTITSVEAGDEADYYCHIWDSRRPTNWVFGEGTTLIVL
VRC03 heavy chain Q 227 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
VRC03 heavy chain 8 227 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLVQSGAVIKTPGSSVKISCRASGYNFRDYSIHWVRLIPDKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDDPDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWGQGTVVVVSSASTKGPSVFPLAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK
VRC03 Light chain R 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
VRC03 Light chain 7 102 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta EIVLTQSPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGSGTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-10-06
Deposition Author(s): Acharya, P. , Kwong, P.D.