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FASTA Sequence PDB Format mmCIF Format
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6LNT

Cryo-em structure of immature zika virus in complex with human antibody dv62.5 fab

PDB DOI: 10.2210/pdb6lnt/pdb

Classification: VIRUS
Organism(s): Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013)

Deposited: 2020-01-02
Deposition Author(s): Corti, D. , Fibriansah, G. , Kostyuchenko, V.A. , Lim, X.N. , Lim, X.X. , Lok, S.M. , Morais, M.C. , Ng, T.S. , Shi, J. , Tan, T.Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 8.0 Å

6lnt
Literature

Cryo-em structure of immature zika virus in complex with human antibody dv62.5 fab

Corti, D. , Fibriansah, G. , Kostyuchenko, V.A. , Lim, X.N. , Lim, X.X. , Lok, S.M. , Morais, M.C. , Ng, T.S. , Shi, J. , Tan, T.Y.

Primary Citation of Related Structures: 6LNT


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope protein A 504 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA
Envelope protein B 504 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA
Envelope protein C 504 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSA
pre-membrane protein D 163 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) RGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKVIYLVMILLIAPAYS
pre-membrane protein E 163 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) RGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKVIYLVMILLIAPAYS
pre-membrane protein F 163 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) RGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKVIYLVMILLIAPAYS
Fab DV62.5 heavy-chain variable region H 120 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) QVQLVQSGAEVKKPGASLKVSCKASGYTFTSYGLSWVRQAPGQGLEWMGWITPYNGNTKYTQKLQGRVTMTTDTSTSTVYMELRSLRSDDTAVYYCARDSGTYAFYFDYWGQGTLVTVSS
Fab DV62.5 heavy-chain variable region P 120 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) QVQLVQSGAEVKKPGASLKVSCKASGYTFTSYGLSWVRQAPGQGLEWMGWITPYNGNTKYTQKLQGRVTMTTDTSTSTVYMELRSLRSDDTAVYYCARDSGTYAFYFDYWGQGTLVTVSS
Fab DV62.5 light-chain variable region L 106 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) SYELTQPLSVSVALGQTASITCGGNNIGSKNVHWYQQKPGQAPVLVIYKYVNRPSGIPERFSGSNSGNTATLTISRAQAGDEADYYCQVWDSSTYVFGTGTKVTVL
Fab DV62.5 light-chain variable region Q 106 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) SYELTQPLSVSVALGQTASITCGGNNIGSKNVHWYQQKPGQAPVLVIYKYVNRPSGIPERFSGSNSGNTATLTISRAQAGDEADYYCQVWDSSTYVFGTGTKVTVL
capsid protein M 117 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) KKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKKRRGADTSVGIVGLLLTTAMA
capsid protein N 117 Homo Sapiens , Zika Virus (Isolate Zikv/Human/French Polynesia/10087Pf/2013) KKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKKRRGADTSVGIVGLLLTTAMA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2020-01-02
Deposition Author(s): Corti, D. , Fibriansah, G. , Kostyuchenko, V.A. , Lim, X.N. , Lim, X.X. , Lok, S.M. , Morais, M.C. , Ng, T.S. , Shi, J. , Tan, T.Y.