6L6Y
Crystal structure of pluripotency reprogramming factor sox17 mutant (sox17ek) hmg domain bound to dna
PDB DOI: 10.2210/pdb6l6y/pdb
Classification: DNA BINDING PROTEIN/DNA,TRANSCRIPTION Organism(s): Mus Musculus , Synthetic Construct
Deposited: 2019-10-29 Deposition Author(s): Balasubramanian, M. , Kolatkar, P.R.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3 Å
Crystal structure of pluripotency reprogramming factor sox17 mutant (sox17ek) hmg domain bound to dna
Balasubramanian, M. , Kolatkar, P.R.
Primary Citation of Related Structures: 6L6Y
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*GP*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*TP*G)-3') | a | 16 | NA | GGTCTCTATTGTCCTG |
| DNA (5'-D(P*GP*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*TP*G)-3') | c | 16 | NA | GGTCTCTATTGTCCTG |
| DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*GP*AP*C)-3') | b | 16 | NA | CCAGGACAATAGAGAC |
| DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*GP*AP*C)-3') | e | 16 | NA | CCAGGACAATAGAGAC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Transcription factor SOX-17 | D | 83 | Mus Musculus , Synthetic Construct | GSFTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAKRLRVQHMQDHPNYKYRPRRRKQ |
| Transcription factor SOX-17 | F | 83 | Mus Musculus , Synthetic Construct | GSFTSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEEAKRLRVQHMQDHPNYKYRPRRRKQ |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2019-10-29 Deposition Author(s): Balasubramanian, M. , Kolatkar, P.R.