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FASTA Sequence PDB Format mmCIF Format
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6L4U

Structure of the psi-fcpi supercomplex from diatom

PDB DOI: 10.2210/pdb6l4u/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Chaetoceros Gracilis

Deposited: 2019-10-21
Deposition Author(s): Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.4 Å

Literature

Structure of the psi-fcpi supercomplex from diatom

Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.

Primary Citation of Related Structures: 6L4U


Proteins
Molecule Chains Sequence Length Organism Sequence
Photosystem I P700 chlorophyll a apoprotein A1 A 751 Chaetoceros Gracilis AISSTERRTKNVQIFVEKDAVETSFEKWAQPGHFSRTLAKGPKTTTWIWNLHADAHDFDSQTNSLEEVSRKIFSAHFGQLAAIFLWISGMHFHGAYFSNYSAWLSDPIGIKQSSQVVWPIVGQEILNADVGGNFQGVQTTSGWFQMWRAEGITSEVELYWIAIGGLIMSALMLFAGWFHYHKAAPKLEWFQNAESMMNHHLAGLLGLGCLSWSGHQIHIALPINKLLDAGVSPQEIPLPHEFLINRELMAQLYPSFGKGLAPFFSGHWGEYSDFLTFKGGLNPVTGGLWLSDIAHHHLALSVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHKGLYEILTTSWHAQLAINLAMMGSLSIIVAHHMYAMPPYPYIATDYATQLSLFTHHMWIGGFCVTGGAAHAAIFMVRDYTPANNYNNLLDRVLRHRDAIISHLNWVCIFLGCHAFGFYIHNDTMRALGRPQDMFSDKAIQLQPIFAQWIQNIHLLAPGTTAPNALATTSYAFGGDVVEVGGKIAMMPIKLGTADFMVHHIHAFTIHVTVLILLKGVLYARSSKLIPDKANLGFRFPCDGPGRGGTCQSSSWDHVFLGLFWMYNSISVVIFHFSWKMQSDVWGTVTPDGSISHITGGNFAQSSITINGWLRDFLWSQASQVIQSYGSASSAYGLIFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLNFAPAIQPRALSITQGRAVGLAHYLLGGIGTTWAFFLARSLSIT
Photosystem I reaction center subunit XII M 30 Chaetoceros Gracilis MIYDSQVYIALVIAVVASVLAIRLGATLYN
Unknown protein 1 1U 130 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Photosystem I reaction center subunit Psa28 2U 121 Chaetoceros Gracilis FAPMPRAAISTTQARTASMPSAPFTSLSMASEDMTWEGEYPPSKVLGPIMSKMPSGLLGLISIACAAVCAYSIAQSGVLQQQPGAYENGSWVKWYYVLGSFGGPLAWGTHVASWIQRKNGM
Fucoxanthin chlorophyll a/c-binding protein Lhcr15 1 227 Chaetoceros Gracilis MILQYFNTFPPPKRSYKKVYNIIIHYFIIMVRSVLLAALVGTAAAFAPATSMTRRSPAVALKAEMSESLPFLPRPEKLDGSMAGDRGFDPMGLSEIQQDLTYARWAELKHGRIAMLAIVGMIVQEYIHLPGEAYQNSDPFGAVSTVGLGVNGQIFAAIGCVELINFNKHYDGSEPGDIGWTGGLLKNKSEAEIMKAKEQEITHCRLAMIAITGATVQTLLFHQPLLG
Fucoxanthin chlorophyll a/c-binding protein Lhcr8 2 205 Chaetoceros Gracilis MKLALLASLIASAAAFAPSSSTGARASTALDAGKQSQALPFLPYPENLSGYVGDAGFDPLRFSDYFPMDYLREAEIKHGRICMLATVGWIAVDMGLRVYPVPAGLEGVTAATAHDASVAQGGLGQVFGWVAVAEMASWIGVSQMLQGSGREPGYFGFDPLGLMKGKSEAEVNNMKLKEIKNGRLAMLAFSGICTQSVLFDKTFPF
Fucoxanthin chlorophyll a/c-binding protein Lhcr2 3 200 Chaetoceros Gracilis MKTVAILSLLTASAAAFAPASTTQTSSSTALAGSVFDNYVGAKDFRGAEFKFDPLKLSETYEPFQGWFRESELRHGRTAMLAVVGYIATDFVRIPGEMYSFEAIPKSADAHDALIASGPMSQLLLWIGLFDLVVTAPAVQAMGKGEREPGDFGLKWFAPSSKDAFDKKREAELLNGRLAMFAIGGIATQSVLNGHGFPYL
Fucoxanthin chlorophyll a/c-binding protein Lhcr9 4 215 Chaetoceros Gracilis MAKLSIALTTAAALASSANAFAPSKGARSVTSALSATGFEEVGGKPWDPLSLGKLEDANDTFPNMFPKSQYLQESEIKHGRMCMLAWTGVWATHVGGMGLGMHIPGMPVESDWTKALGVFAAEQPALFGAILLFISIAEGESVGHSGDNWRNMSTKEPGNLGFDWMGLTKKLSEEKVARYKIVELKNGRAAMIAMASLFAMEAIPGSVPIMNVFN
Fucoxanthin chlorophyll a/c-binding protein Lhcr11 5 266 Chaetoceros Gracilis MVVCHLILSRITNFLPLSLAHYRTCTSPTPTTPPKKTVVSSALHAEMSKAVPFVKAPANTAGYVGDVGFDPLGFSDYFDMKWLRESEIKHGRASMLACLGFVVQEYITIPGYTHVDDSNLAPQAVGVSAMLQIVLWMGVLEFWTNKGNVTMETMFSSPDRIPGNLGFDPMGLSVGKSQAEKDEMALKEIKNGRLAMLAIGGMIHHNWRKRHGALTSRERERNVLQTLDAFLKVHMHTVLCVSCSIWDVNSIFIMRDGIESSFGFPD
Fucoxanthin chlorophyll a/c-binding protein Lhcr12 6 208 Chaetoceros Gracilis MKLALLASLIASAAAFAPSSSTGAARASTALDAGKKSQALPFLPYPENLAGYVGDAGFDPFRFSDFAPMDFLREAEIKHGRICMLAWLGFVAVDLGARIYPLPEAYEGLTAVTAHDALVQQGAMSQIFLWCSVFEAISTVSVIQMLYEESGREPGYFGFDPLGFLNGKSEAEVNEMKLKEIKNGRLAMLAFSGVVTQAVLTQGPFPYV
Fucoxanthin chlorophyll a/c-binding protein Lhcr10 7 296 Chaetoceros Gracilis LLQGFSRWLVFFVSIRIIRHPCRPPYHETYSSSNTFLSIQYIEQSHSARQTSLSLLLITPLTLVLYLAIYTILKMFKTAAAITSLLAASASAFAPSSFNGRISTAVAAEKSQSLPFMNRPPLLDGSMAGDVGFDPLGLSNIDDVGIDLYWLREAEIKHCRVAMLAVVGILQVEIFGPAPGCEMATDKCQMDAFWQIWGAHPQYIAFGLIMIMMIEMISGIATTQGRESGERAPGDFGLDPLGYGKGDAAGYARLQAQEIANGRLAMFAAAGEIMQGCTTHQGALENLMTALRDNSF
Photosystem I P700 chlorophyll a apoprotein A2 B 733 Chaetoceros Gracilis MATKFPKFSQALAQDPATRRIWYGIATAHDLEAHDGMTEENLYQKIFASHFGHLAIIFLWTAGNLFHVAWQGNFEQWVAKPLKTKPIAHSIWDPHFGESALKAFSKGNTYPVNIAFSGVYQWWYTIGFRTNQELYAGSIGLLALSCVLLFAGWLHLQPKFRPSLSWFKNNESRLNHHLSGLLGVSSLAWTGHIVHVAIPASRGVHVGWDNFLTTPPHPAGLTPFFTGNWTVYAENPDSASHVYGTSEGAGTAILTFLGGFHPQTQSLWLSDIAHHQLAIAVVFIIAGHMYRTNFGIGHNMKEILDAHRPPGGRLGAGHVGLFETITNSLHMQLGLALASLGVATSLTAQHMYALTPYAYLSKDFTTEAALYTHHQYIAGFLMVGAFAHGAIFFVRDYDPELNKNNVLARMLEHKEAIISHLSWASLFLGFHTLGLYIHNDTVVAFGQPEKQILFEPVFAEYIQAASGKAVYQFNVLLSSPTSPATVAGNQVWLPGWLDAINNPKNDLFLKIGPGDFLVHHAIALGLHVTALILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYWHWKHMTIWGGNPGQFDESSNYIMGWLRDYLWLNSSPLINGYNPFGMNNLSVWSWMFLFGHLIWATGFMFLISWRGYWQELIETLVWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYILTYAAFVIASTSGKFG
Fucoxanthin chlorophyll a/c-binding protein Lhcr4 8 270 Chaetoceros Gracilis LRSIHHLIASHRRLFKFIRHYTINKMKSALIATALLAGSAAAFTSNAGSQSTSALKAMPERLWDSMVDKTERSKAVPFLPRAVNLDGSLPGDVGFDPFYLSSIPKDFSGFIQPPQWEEKGIPTLYWMREAELKHCRVAMLAWFGWLATDGAFGVTLRFPGEIYSVENIPTAYEAHNALVSQGSMGFLLLAVGFIEFCTGAVLVEVAKGASDREAGDFKLDPLSFLKGKSEEEIKRMKTREIANGRLAMLAFGGVATQTALEGGNHAFPYF
Fucoxanthin chlorophyll a/c-binding protein Lhcf6 9 214 Chaetoceros Gracilis LLLPYSPYLKSSLTHFDISSHSQPPLFSTNPHSSAFAPSSQTNVRSTSSLQAWKDENIIGITAPMGFFDPLGLSSGKSDEVMNLYREAELKHGRVAMAACLGWYITAAGVHPAFNSALSSDPLEAAKQLPTVGWLQFVLGCGAIEWLAQQIKARPGYQPGDILGAAYWVDNSDEGWVDYQNKEINNGRLAMVAFMGIFVQDLYFGNYGDQIFRN
Fucoxanthin chlorophyll a/c-binding protein Lhcr3 10 207 Chaetoceros Gracilis MKSVAILAALFGSATAFVPSQVSRTAASTSVKASLADMVGAEGPEPIPFAPSKTSKNFDPVGFAERSPEWLPWYREAELKHGRAAMLATVGFVVPEFIRVPGEQFSFEAIPKVIDAHDALPESMIQIFGWISFLEACTFPAMAGLGGKYDRKPGDFSFDPLGLYPTDPEKQKQMQLAELKNGRLAMIAIGGMVTGAAVTGHGFPYLP
Fucoxanthin chlorophyll a/c-binding protein Lhcq13 11 229 Chaetoceros Gracilis MKTAAIFALLAGSAAAFAPTTVSPRASTVAHMSSINEAFGISIETGNKCPPLGARILEDAQPSAIKWFQNAEIKHGRIAMVATIGYLVQKLGVHFPLYLGPSGSNCFHPESETAWLLSSSTGVTFSDIAKAAPLDAIQMVPVAGWMQIFFVAGWFESVAYYRQWVKNSPIPGDYGYDPLGFTKREGGWDSEELTSLRLKEIKNGRLAMMTIAAWVSDEMIPGALPVWHP
Fucoxanthin chlorophyll a/c-binding protein Lhcq3 12 204 Chaetoceros Gracilis MKSVLFLALAGSAAAFAPSTQSRSNTLLKADLSSLPGSTAPVGPFDPLNLADSGSEETLAWFRASELKHGRVAMLATTGYLVQGAGIHFPGMLSSDVSFESLSAMKPLEAWDAVPDAGKAQILGTIFIAEMITESKPVHYTKGGPMPTMVFPAIDFSGVDAATLKRKQDSELNNGRLAMIAIMSFISAANIPGSVPALTNNPAF
Fucoxanthin chlorophyll a/c-binding protein Lhcq11 13 244 Chaetoceros Gracilis MKLAILTTLLAGASAFTTPNARPAFATKLSMSEEAAAEEAPAADAPEEVVEPASPSYTCISKEAILSSPDTTEIGRVWDPLGLAEIGSAETLAWYRHSEVKHGRIAMAAFVGWWAVGAGLRFPGELSHGLEFSSIPSKGLEAWDAVPGWGKAQMLLFAGLIEFHDELFHTRRTEGGHYLRGGTPGKNMVPGLFDPFGFSKGKSEEELAKGRDREIKNGRLAMIGVAGLYCAATIPGSVPLQPPC
Fucoxanthin chlorophyll a/c-binding protein Lhcq10 14 249 Chaetoceros Gracilis MKIILSGLALLASSVAAFAPQSIISANANNKNANVVLEAAKDDLIAIAEKSNPVLKYYDPLQLGSTTIWGETNSATIGFLRQSEIKHGRIAMAAFVGYIVQANGIHFPWPMSFDGTPFPADAGSPPEQWDALSDAAKWQIILFIGFLEWFSEAAGKHYMRGGKPGAFPNFSDSDLIPHPVPLNLYDPFGFSKGKTEAQKADGLIKELNNGRLAMIGIMGFLAEQKVEGSVPLLKGVVPHYDGEVMAPFM
Fucoxanthin chlorophyll a/c-binding protein Lhcq8 15 281 Chaetoceros Gracilis MDNKIAGYNIIIHTIISSINMKFSLVVLSSLVVASSNGVTAFAPSSSTTSTSTTALSSSASKAELEAIAKKANPTLGYYDPLSLADKDFWGKGNDATIAFLRQSEIKHGRIAMFAFVGYIVQSNFVFPWAQTLAGAPHPSADLSPEAQWDAIPLGAKWQIFAVISALELWDECGGGGVLPHYTKGRKPGQYPPFTLFRDNVHFVLDLYDPFGFNKNMSEETKERRLVSELNNGRLAMLGIFGFLCADTIPGSVPLLNDIAIPYSGQVMQPFEGQFSYFGSL
Fucoxanthin chlorophyll a/c-binding protein Lhcq5 16 218 Chaetoceros Gracilis MKIATLFLALASSAAAFAPSQQVRSMTNEKMKPRQARNNFALNMKVDEMPGATAPLGKFDPLNLATLGSESTLAWFRAAELKHSRVAMLATTGYLVQAAGIHFPGMLSSDVSFESLSAMKPLDAWDAVPEGGKNQIYFTIFLAEFITECKGTHYTKGGPLPTIVFPPIDFSTVNPEQLKTRQNRELNNGRLAMIAIMSFVAAANIPGSVPALAGNPMF
Photosystem I iron-sulfur center C 81 Chaetoceros Gracilis MSHTVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKSGQIASSPRVEDCVGCKRCETACPTDFLSVRVYLGAETTRSLGLAY
Photosystem I reaction center subunit II D 139 Chaetoceros Gracilis MTLNLQTPFPTFGGSTGGWLRSAEVEEKYAITWTSKKEQIFEMPTGGAAIMRNGENLLYLARKEQCLALGTQLRTFKINDYKIYRIFPSGEVQYLHPKDGVFPEKVNPGRTSVNSRDFSIGKNPNPASIKFSGTTTYES
Photosystem I reaction center subunit IV E 67 Chaetoceros Gracilis MVGRGSKVRILRKESYWFNQVGTVATIDQSGIRYPALVRFESVNYAGTNSNNFALDELKEVVEETEE
Photosystem I reaction center subunit III F 185 Chaetoceros Gracilis MKRFNILTLLVAVLITLTPNIASAEIGGLTKCSDSPAFAKREKASIKKLEQRKSTYEAGTPPALALQQQIERTEARFDKYSRSELLCGADGLPHLIADGRWSHAAEFMLPGFGFIYISGWIGWVGRKYLRAVSTTKNPAESEIIINVPLALKIMTTGYIWPISAWEELVSGDLVALDEEVTVSPR
Photosystem I reaction center subunit VIII I 36 Chaetoceros Gracilis MAAAFLPSILVPIVGLIFPAFSMALFFLYIQQDDIA
Photosystem I reaction center subunit IX J 41 Chaetoceros Gracilis MKNFQKYLSTAPVLLTIWMTFTAGFIIEINRFFPDMLGLYF
Photosystem I reaction center subunit XI L 151 Chaetoceros Gracilis MANFIKPYNDDPFVGHLATPITSSAVTRALLKNLPAYRFGLTPLLRGLEIGLAHGYFLIGPFVKLGPLRNSDIALIAGFLSTIGLILILTLGLTIYGAAVFNSDKESLETTETTLQTRKAWDQFKGGFFVGACGSAGFALICLSSIPQSIL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-10-21
Deposition Author(s): Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.