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6L40

Discovery of novel peptidomimetic boronate clpp inhibitors with noncanonical enzyme mechanism as potent virulence blockers in vitro and in vivo

PDB DOI: 10.2210/pdb6l40/pdb

Classification: HYDROLASE/INHIBITOR
Organism(s): Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1)

Deposited: 2019-10-15
Deposition Author(s): Bao, R. , He, L.H. , Ju, Y. , Luo, Y.F.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.209 Å

6l40
Literature

Discovery of novel peptidomimetic boronate clpp inhibitors with noncanonical enzyme mechanism as potent virulence blockers in vitro and in vivo

Bao, R. , He, L.H. , Ju, Y. , Luo, Y.F.

Primary Citation of Related Structures: 6L40


Proteins
Molecule Chains Sequence Length Organism Sequence
ATP-dependent Clp protease proteolytic subunit E 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit A 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit B 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit C 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit D 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit F 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit G 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit H 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit I 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit J 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit K 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit L 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit M 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
ATP-dependent Clp protease proteolytic subunit N 175 Staphylococcus Aureus (Strain Bovine Rf122 / Et3-1) DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-10-15
Deposition Author(s): Bao, R. , He, L.H. , Ju, Y. , Luo, Y.F.