6KMX
Structure of psi from h. hongdechloris grown under far-red light condition
PDB DOI: 10.2210/pdb6kmx/pdb
Classification: ELECTRON TRANSPORT Organism(s): Halomicronema Hongdechloris C2206
Deposited: 2019-08-01 Deposition Author(s): Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.41 Å
Structure of psi from h. hongdechloris grown under far-red light condition
Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.
Primary Citation of Related Structures: 6KMX
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem I P700 chlorophyll a apoprotein A1 | AA | 784 | Halomicronema Hongdechloris C2206 | MTTSPPEQRQRVRVEVDQNPNPTSFEKWAKPGHFERSLARGPKTTTWIWDLHADAHDFDSHTTDLEDISRKIFSAHFGHLAVIFLWLSGMYFHGARFSNFSSWMTDPIHIKPSAQVVWPIFGQEILNADMGDGFRGIQITSGLFQMWRGEGFTHEFQLFWTAIGALVMAALMMFAGWFHYHVRAPKLDWFRNWESMMNHHLAGLLGLGSLGWAGHLIHVALPTNKLLDAGVPLEDIPLPHEFILNKSLMVDLYPSFAEGVKPFFTLNWSAYADFLTFKGGLNPVTGGLWMTDIAHHHVAIAVLFIIAGHFYRTNWGIGHSFRELLDDARTPKMLPIFNFIGPVGHRGLDKIFETSWHANLAIHLVQFGTASLLVAHHMYAMPPYPYLATDYATVTSLFTHHVWIAGFCIVGGAAHAAIFLVRDYNPADHVNNVLDRTLRHRDTVVSHLAWVCQFLGFHSFAMYCHNDTMRAFGRPQDMFSDTGIQLQPIFAQWVQQIQTMAVGANLQAAEPLGNVFGGLRNIDLAGVGVTAPGLGGPVSHAFGGGVVAIGDKIAMMPIQLGTADFLIHHIHAFTIHVTVLVLLKGVLFSRNSRLIPDKGELGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFFWKMQSDVWGTVGADGTISHITGGNFAQASITNNGWLRDFLWAQASQVIGSYGSALSAYGLFFLAGHFIFGFSLMFLFSGRGYWQELIESIVWAHNKLKITTAIQPRALSITQGRAVGVAHYLLGGIVTTWAFFLARMAAIG |
| Photosystem I P700 chlorophyll a apoprotein A1 | BA | 784 | Halomicronema Hongdechloris C2206 | MTTSPPEQRQRVRVEVDQNPNPTSFEKWAKPGHFERSLARGPKTTTWIWDLHADAHDFDSHTTDLEDISRKIFSAHFGHLAVIFLWLSGMYFHGARFSNFSSWMTDPIHIKPSAQVVWPIFGQEILNADMGDGFRGIQITSGLFQMWRGEGFTHEFQLFWTAIGALVMAALMMFAGWFHYHVRAPKLDWFRNWESMMNHHLAGLLGLGSLGWAGHLIHVALPTNKLLDAGVPLEDIPLPHEFILNKSLMVDLYPSFAEGVKPFFTLNWSAYADFLTFKGGLNPVTGGLWMTDIAHHHVAIAVLFIIAGHFYRTNWGIGHSFRELLDDARTPKMLPIFNFIGPVGHRGLDKIFETSWHANLAIHLVQFGTASLLVAHHMYAMPPYPYLATDYATVTSLFTHHVWIAGFCIVGGAAHAAIFLVRDYNPADHVNNVLDRTLRHRDTVVSHLAWVCQFLGFHSFAMYCHNDTMRAFGRPQDMFSDTGIQLQPIFAQWVQQIQTMAVGANLQAAEPLGNVFGGLRNIDLAGVGVTAPGLGGPVSHAFGGGVVAIGDKIAMMPIQLGTADFLIHHIHAFTIHVTVLVLLKGVLFSRNSRLIPDKGELGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFFWKMQSDVWGTVGADGTISHITGGNFAQASITNNGWLRDFLWAQASQVIGSYGSALSAYGLFFLAGHFIFGFSLMFLFSGRGYWQELIESIVWAHNKLKITTAIQPRALSITQGRAVGVAHYLLGGIVTTWAFFLARMAAIG |
| Photosystem I P700 chlorophyll a apoprotein A1 | CA | 784 | Halomicronema Hongdechloris C2206 | MTTSPPEQRQRVRVEVDQNPNPTSFEKWAKPGHFERSLARGPKTTTWIWDLHADAHDFDSHTTDLEDISRKIFSAHFGHLAVIFLWLSGMYFHGARFSNFSSWMTDPIHIKPSAQVVWPIFGQEILNADMGDGFRGIQITSGLFQMWRGEGFTHEFQLFWTAIGALVMAALMMFAGWFHYHVRAPKLDWFRNWESMMNHHLAGLLGLGSLGWAGHLIHVALPTNKLLDAGVPLEDIPLPHEFILNKSLMVDLYPSFAEGVKPFFTLNWSAYADFLTFKGGLNPVTGGLWMTDIAHHHVAIAVLFIIAGHFYRTNWGIGHSFRELLDDARTPKMLPIFNFIGPVGHRGLDKIFETSWHANLAIHLVQFGTASLLVAHHMYAMPPYPYLATDYATVTSLFTHHVWIAGFCIVGGAAHAAIFLVRDYNPADHVNNVLDRTLRHRDTVVSHLAWVCQFLGFHSFAMYCHNDTMRAFGRPQDMFSDTGIQLQPIFAQWVQQIQTMAVGANLQAAEPLGNVFGGLRNIDLAGVGVTAPGLGGPVSHAFGGGVVAIGDKIAMMPIQLGTADFLIHHIHAFTIHVTVLVLLKGVLFSRNSRLIPDKGELGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFFWKMQSDVWGTVGADGTISHITGGNFAQASITNNGWLRDFLWAQASQVIGSYGSALSAYGLFFLAGHFIFGFSLMFLFSGRGYWQELIESIVWAHNKLKITTAIQPRALSITQGRAVGVAHYLLGGIVTTWAFFLARMAAIG |
| Photosystem I P700 chlorophyll a apoprotein A2 | AB | 743 | Halomicronema Hongdechloris C2206 | MATKFPKFSQDLQRDPTTRRLFYAIATAHDFESHDGMSEENLYQRIFASHFGHLAIIFLWISGILFHVAWQGNFEQWIQDPLNNSPIAHAIWDAQFGPPAIAAYTQAGAMNPVDICYSGVYHWWYTIGMRTNNDLFMGSIFLLLLSSVMLYAGWLHLQPRFRPGLAWFKNAESRLNHHLAGLFGVSSLAWTGHLVHVALPESRGQHVGWDNFLSIRPHPEGLAPLFTGNWGAYAQNPDTAEHAFGTAQGAGSAILTFLGGFHPQTESLWLTDMAHHHLAIAVIFIVAGHMYRTNFGIGHNIKEMTEALQGPGRSGFFIAPRTGRGHKGIYDTYNNSLHFQLGWHLACLGVITSLVAQHMYAMPPYAFMARDYTTMSALYTHHQYIAGFLMIGAFAHGAIFLIRDYDPEANRDNVLARMLAHKEAIISHLSWVSLFLGFHTLGLYVHNDCEVALGSPEKQILIEPVFAQWTQAFHGKALYGINSLLSNPDSVASTAWPNYGNVWLSGWLEAVNNGANSLFLTIGPGDLLVHHAIALGLHVTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLATFWMLNTLGWVTFYWHWKHLSVWSGNVAQFNESSTYLMGWFRDYLWANSAQLINGYSPAGTNSLAVWAWMFLFGHLAWAVSFMFLITWRGYWQELIETLMWAHENTPLSFGYPKDKPVALSIVQARLVGLTHFTVGYIATYGAFLIASTSSRFP |
| Photosystem I P700 chlorophyll a apoprotein A2 | BB | 743 | Halomicronema Hongdechloris C2206 | MATKFPKFSQDLQRDPTTRRLFYAIATAHDFESHDGMSEENLYQRIFASHFGHLAIIFLWISGILFHVAWQGNFEQWIQDPLNNSPIAHAIWDAQFGPPAIAAYTQAGAMNPVDICYSGVYHWWYTIGMRTNNDLFMGSIFLLLLSSVMLYAGWLHLQPRFRPGLAWFKNAESRLNHHLAGLFGVSSLAWTGHLVHVALPESRGQHVGWDNFLSIRPHPEGLAPLFTGNWGAYAQNPDTAEHAFGTAQGAGSAILTFLGGFHPQTESLWLTDMAHHHLAIAVIFIVAGHMYRTNFGIGHNIKEMTEALQGPGRSGFFIAPRTGRGHKGIYDTYNNSLHFQLGWHLACLGVITSLVAQHMYAMPPYAFMARDYTTMSALYTHHQYIAGFLMIGAFAHGAIFLIRDYDPEANRDNVLARMLAHKEAIISHLSWVSLFLGFHTLGLYVHNDCEVALGSPEKQILIEPVFAQWTQAFHGKALYGINSLLSNPDSVASTAWPNYGNVWLSGWLEAVNNGANSLFLTIGPGDLLVHHAIALGLHVTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLATFWMLNTLGWVTFYWHWKHLSVWSGNVAQFNESSTYLMGWFRDYLWANSAQLINGYSPAGTNSLAVWAWMFLFGHLAWAVSFMFLITWRGYWQELIETLMWAHENTPLSFGYPKDKPVALSIVQARLVGLTHFTVGYIATYGAFLIASTSSRFP |
| Photosystem I P700 chlorophyll a apoprotein A2 | CB | 743 | Halomicronema Hongdechloris C2206 | MATKFPKFSQDLQRDPTTRRLFYAIATAHDFESHDGMSEENLYQRIFASHFGHLAIIFLWISGILFHVAWQGNFEQWIQDPLNNSPIAHAIWDAQFGPPAIAAYTQAGAMNPVDICYSGVYHWWYTIGMRTNNDLFMGSIFLLLLSSVMLYAGWLHLQPRFRPGLAWFKNAESRLNHHLAGLFGVSSLAWTGHLVHVALPESRGQHVGWDNFLSIRPHPEGLAPLFTGNWGAYAQNPDTAEHAFGTAQGAGSAILTFLGGFHPQTESLWLTDMAHHHLAIAVIFIVAGHMYRTNFGIGHNIKEMTEALQGPGRSGFFIAPRTGRGHKGIYDTYNNSLHFQLGWHLACLGVITSLVAQHMYAMPPYAFMARDYTTMSALYTHHQYIAGFLMIGAFAHGAIFLIRDYDPEANRDNVLARMLAHKEAIISHLSWVSLFLGFHTLGLYVHNDCEVALGSPEKQILIEPVFAQWTQAFHGKALYGINSLLSNPDSVASTAWPNYGNVWLSGWLEAVNNGANSLFLTIGPGDLLVHHAIALGLHVTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLATFWMLNTLGWVTFYWHWKHLSVWSGNVAQFNESSTYLMGWFRDYLWANSAQLINGYSPAGTNSLAVWAWMFLFGHLAWAVSFMFLITWRGYWQELIETLMWAHENTPLSFGYPKDKPVALSIVQARLVGLTHFTVGYIATYGAFLIASTSSRFP |
| Photosystem I iron-sulfur center | AC | 81 | Halomicronema Hongdechloris C2206 | MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGSIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY |
| Photosystem I iron-sulfur center | BC | 81 | Halomicronema Hongdechloris C2206 | MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGSIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY |
| Photosystem I iron-sulfur center | CC | 81 | Halomicronema Hongdechloris C2206 | MSHSVKIYDTCIGCTQCVRACPLDVLEMVPWDGCKAGSIASSPRTEDCVGCKRCETACPTDFLSIRVYLGAETTRSMGLAY |
| Photosystem I reaction center subunit II | AD | 142 | Halomicronema Hongdechloris C2206 | MAETLTGKTPVFGGSTGGLLTRAAVEEKYAITWTSTKQQVFEMPTGGAAIMHEGENLLYLARKEQCLALGTQLRSKFKPKIEDYKIYRIYPNGETQYVHPADGVFPEKVNEGREYNGKIDRNIGANPDPATVKFSGKAPYEV |
| Photosystem I reaction center subunit II | BD | 142 | Halomicronema Hongdechloris C2206 | MAETLTGKTPVFGGSTGGLLTRAAVEEKYAITWTSTKQQVFEMPTGGAAIMHEGENLLYLARKEQCLALGTQLRSKFKPKIEDYKIYRIYPNGETQYVHPADGVFPEKVNEGREYNGKIDRNIGANPDPATVKFSGKAPYEV |
| Photosystem I reaction center subunit II | CD | 142 | Halomicronema Hongdechloris C2206 | MAETLTGKTPVFGGSTGGLLTRAAVEEKYAITWTSTKQQVFEMPTGGAAIMHEGENLLYLARKEQCLALGTQLRSKFKPKIEDYKIYRIYPNGETQYVHPADGVFPEKVNEGREYNGKIDRNIGANPDPATVKFSGKAPYEV |
| Photosystem I reaction center subunit IV | AE | 68 | Halomicronema Hongdechloris C2206 | MVQRGSKVRILRPESYWYRDIGTVATVDQSGIRYPAIVRFDKVNYYGISSNNFALSELEEVEPPKKKK |
| Photosystem I reaction center subunit IV | BE | 68 | Halomicronema Hongdechloris C2206 | MVQRGSKVRILRPESYWYRDIGTVATVDQSGIRYPAIVRFDKVNYYGISSNNFALSELEEVEPPKKKK |
| Photosystem I reaction center subunit IV | CE | 68 | Halomicronema Hongdechloris C2206 | MVQRGSKVRILRPESYWYRDIGTVATVDQSGIRYPAIVRFDKVNYYGISSNNFALSELEEVEPPKKKK |
| Photosystem I reaction center subunit VIII | AI | 63 | Halomicronema Hongdechloris C2206 | MADMTQLTGAYAAPWLPWIMIPLIFYILPFPIFAIIFLWIEREGNGVNDMGGEPMKSDGNYPV |
| Photosystem I reaction center subunit VIII | BI | 63 | Halomicronema Hongdechloris C2206 | MADMTQLTGAYAAPWLPWIMIPLIFYILPFPIFAIIFLWIEREGNGVNDMGGEPMKSDGNYPV |
| Photosystem I reaction center subunit VIII | CI | 63 | Halomicronema Hongdechloris C2206 | MADMTQLTGAYAAPWLPWIMIPLIFYILPFPIFAIIFLWIEREGNGVNDMGGEPMKSDGNYPV |
| Photosystem I reaction center subunit PsaK | AK | 96 | Halomicronema Hongdechloris C2206 | MFGFGIAGFNGGLLAQASPQTAEWSLSIAVIMVVCNLFVLAIGKYAIQRPGAGPELPVQLPMLFAGFGLPELLATASLGHILGAGMILGLGNAGLL |
| Photosystem I reaction center subunit PsaK | BK | 96 | Halomicronema Hongdechloris C2206 | MFGFGIAGFNGGLLAQASPQTAEWSLSIAVIMVVCNLFVLAIGKYAIQRPGAGPELPVQLPMLFAGFGLPELLATASLGHILGAGMILGLGNAGLL |
| Photosystem I reaction center subunit PsaK | CK | 96 | Halomicronema Hongdechloris C2206 | MFGFGIAGFNGGLLAQASPQTAEWSLSIAVIMVVCNLFVLAIGKYAIQRPGAGPELPVQLPMLFAGFGLPELLATASLGHILGAGMILGLGNAGLL |
| Photosystem I reaction center subunit XI | AL | 189 | Halomicronema Hongdechloris C2206 | MTNTETSTWVDAYDQKDIIQPYRGNPELGNLATPVNSSNLVKTYINNLPAYRPGLTPFLRGLEIGMAHGYFLVGPEVVVGPLRETAHGANLSGLITAIYITVSACLGISIFALATFQGDPRGAYNSNSPDRLRPLRSKDGWFQLSGGILLGSMGGAIFAYVLLENFGDLDAILRGAVNVSQWLGGGVMG |
| Photosystem I reaction center subunit XI | BL | 189 | Halomicronema Hongdechloris C2206 | MTNTETSTWVDAYDQKDIIQPYRGNPELGNLATPVNSSNLVKTYINNLPAYRPGLTPFLRGLEIGMAHGYFLVGPEVVVGPLRETAHGANLSGLITAIYITVSACLGISIFALATFQGDPRGAYNSNSPDRLRPLRSKDGWFQLSGGILLGSMGGAIFAYVLLENFGDLDAILRGAVNVSQWLGGGVMG |
| Photosystem I reaction center subunit XI | CL | 189 | Halomicronema Hongdechloris C2206 | MTNTETSTWVDAYDQKDIIQPYRGNPELGNLATPVNSSNLVKTYINNLPAYRPGLTPFLRGLEIGMAHGYFLVGPEVVVGPLRETAHGANLSGLITAIYITVSACLGISIFALATFQGDPRGAYNSNSPDRLRPLRSKDGWFQLSGGILLGSMGGAIFAYVLLENFGDLDAILRGAVNVSQWLGGGVMG |
| Photosystem I reaction center subunit XII | AM | 31 | Halomicronema Hongdechloris C2206 | MTLSETQVFVALVIALVPAILAFRLSTELYK |
| Photosystem I reaction center subunit XII | BM | 31 | Halomicronema Hongdechloris C2206 | MTLSETQVFVALVIALVPAILAFRLSTELYK |
| Photosystem I reaction center subunit XII | CM | 31 | Halomicronema Hongdechloris C2206 | MTLSETQVFVALVIALVPAILAFRLSTELYK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-08-01 Deposition Author(s): Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.