6KI3
The crystal structure of asfvap:df commplex
PDB DOI: 10.2210/pdb6ki3/pdb
Classification: DNA BINDING PROTEIN/DNA Organism(s): African Swine Fever Virus (Isolate Tick/South Africa/Pretoriuskop Pr4/1996) , Synthetic Construct
Deposited: 2019-07-17 Deposition Author(s): Chen, Y. , Gan, J.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.354 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Probable AP endonuclease | A | 301 | African Swine Fever Virus (Isolate Tick/South Africa/Pretoriuskop Pr4/1996) , Synthetic Construct | GSGGGMFGAFVSHRLWSDSGCTTTCITNSIANYVAFGEQIGFPFKSAQVFIAGPRKAVINIQEDDKVELLKMIVKHNLWVVAHGTYLDVPWSRRSAFVTHFIQQELLICKEVGIKGLVLHLGAVEPELIVEGLKKIKPVEGVVIYLETPHNKHHTYKYSTMEQIKELFLRIRNTRLKQIGLCIDTAHIWSSGVNISSYNDAGQWLRSLENIHSVIPPSHIMFHLNDAATECGSGIDRHASLFEGMIWKSYSHKIKQSGLYCFVEYITRHQCPAILERNLGSSMQLQTALTAEFTTLKSLLK |
| Probable AP endonuclease | B | 301 | African Swine Fever Virus (Isolate Tick/South Africa/Pretoriuskop Pr4/1996) , Synthetic Construct | GSGGGMFGAFVSHRLWSDSGCTTTCITNSIANYVAFGEQIGFPFKSAQVFIAGPRKAVINIQEDDKVELLKMIVKHNLWVVAHGTYLDVPWSRRSAFVTHFIQQELLICKEVGIKGLVLHLGAVEPELIVEGLKKIKPVEGVVIYLETPHNKHHTYKYSTMEQIKELFLRIRNTRLKQIGLCIDTAHIWSSGVNISSYNDAGQWLRSLENIHSVIPPSHIMFHLNDAATECGSGIDRHASLFEGMIWKSYSHKIKQSGLYCFVEYITRHQCPAILERNLGSSMQLQTALTAEFTTLKSLLK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(*GP*CP*AP*GP*CP*GP*TP*CP*C)-3') | c | 9 | NA | GCAGCGTCC |
| DNA (5'-D(*GP*CP*AP*GP*CP*GP*TP*CP*C)-3') | f | 9 | NA | GCAGCGTCC |
| DNA (5'-D(P*(3DR)P*CP*GP*AP*CP*GP*AP*G)-3') | d | 8 | NA | NCGACGAG |
| DNA (5'-D(P*(3DR)P*CP*GP*AP*CP*GP*AP*G)-3') | g | 8 | NA | NCGACGAG |
| DNA (5'-D(*CP*CP*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*GP*CP*TP*G)-3') | e | 17 | NA | CCTCGTCGGGGACGCTG |
| DNA (5'-D(*CP*CP*TP*CP*GP*TP*CP*GP*GP*GP*GP*AP*CP*GP*CP*TP*G)-3') | h | 17 | NA | CCTCGTCGGGGACGCTG |
Experimental Data
Method: X-RAY DIFFRACTION