6KF3
Cryo-em structure of thermococcus kodakarensis rna polymerase
PDB DOI: 10.2210/pdb6kf3/pdb
Classification: TRANSCRIPTION Organism(s): Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805)
Deposited: 2019-07-06 Deposition Author(s): Bartlett, M.S. , Cha, J.S. , Cho, H.-S. , Hyun, J. , Jeong, H. , Jun, S.-H. , Kim, H. , Murakami, K.S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.9 Å
Cryo-em structure of thermococcus kodakarensis rna polymerase
Bartlett, M.S. , Cha, J.S. , Cho, H.-S. , Hyun, J. , Jeong, H. , Jun, S.-H. , Kim, H. , Murakami, K.S.
Primary Citation of Related Structures: 6KF3
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA-directed RNA polymerase subunit | A | 906 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MQSMKKVIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRCETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYMQKFEVMGDRKGAVDKLIKEIHKKAKERMVCPHCGAPQFPIKFERPTIYWELRKDEEGNEYKHRMMPSEVRDRLEKIPDKDLPLLGLHPEKSRPEWMVLTVLPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMESNRELIAEKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLPVCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVNELPEPDKYENGEPLWSGKTIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLIPDPEEVRKLAYDGFVYIQNGKLLSGAVDKKAYGREDGKLLDIIVREYGVERARQFLDQVTKLTIWVITHKGFTTAIDDEDLPQEAIDRIHEIIREAEEKVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGVDPMKSWQGKTVDVDRVIVRTLLKMRGGGE |
| DNA-directed RNA polymerase subunit N | N | 65 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MIVPVRCFTCGKVLADKYYEFKKRVEAGEDPGKVLDDLGVERYCCRRTLLSHVELIDQVMVYKVY |
| DNA-directed RNA polymerase subunit P | P | 49 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MATAVYRCAKCGKEVELDLATAREVRCPYCGSKILYKPRPRVARRVKAI |
| DNA-directed RNA polymerase subunit beta | B | 1123 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MSRGVTVTEPTLTPDELWLVMESYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQEAQGQRRPLYPMDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDLAPNKTLVERDERQNKVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVSDDPRIQQVLFDNLEDASDISTQEEALDYIGRLALPGQPKEYRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNSIRPDVLSERIEHALATGSWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEREVREYLMKMGVVPIEERRPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEEVKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIEYLDAEEEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAPRNTYGAGMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPAGQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGKVASLTGRRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCESCGHLALEDKRRGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMVIRPSLRLKDRV |
| DNA-directed RNA polymerase subunit A'' | C | 391 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MVAEKTIKSMVSKAELPDNIKEELYAKLIEYNEKYKLKKDEIQAIIDETVREYQKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAREETIDILNMEYVVEIDPERLEKAGLDMEKVVRKLTGSFKSAEFEAEGYTLVVRPKKVTKLSDLRKIAEKVKKHRLKGLSGVGKTIIRKEGDEYVIYTEGSNFKQVLKVPGVDPTRTRTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAMSLPLRPKRE |
| DNA-directed RNA polymerase subunit D | D | 259 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MVEFKILEKRPDSIKFIVSGVDVPFANALRRTILSEVPTFAVDEVEFLENDSALFDEIIAHRLAMIPLTTPHERFSLDALELDDYTVTLSLEAEGPGMVYSGDLKSSDGDVKPANPNIPIVKLAEGQRLTFNAYARLGRGKDHAKWQPGFVYYKYLTKIHVSKDVPDWEELKELAERRGLPVEESDEEIVITTIKAFYLPRKFEEHMGKGIREEIVPGSFVFTVETNGELPVEEIVSIALKILMRKSDRFINELHKLAD |
| DNA-directed RNA polymerase, subunit E | E | 190 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MYKLLKVKDVVRIPPRMFTMDPKEAAKIVLRETYEGIYDRDEGVVLAILDVEEISEGVIVPGDGATYHEAIFNVLVWEPRNQEVVEGEVVEMMPYGAFIRIGPMDGLVHISQLMDDYVVFDEKNRQFIGKETNRVLKLGDYVRARIIGVSVKSRVIRENKINMTMRQPGLGKFEWIEKEKKKAKEESKGE |
| DNA-directed RNA polymerase, subunit F | F | 122 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MIGRKKLEEHYITIAEAKELLERRHAEGLAENPEEPMFYEARVSLEHAERFAKLKPEQARELKEKLMGLFDWINERIAAKLVDILPEDYLDIRVIFAKEEYMPTPEEAEEIIKVIDEYRPLE |
| DNA-directed RNA polymerase subunit H | H | 82 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MAAKKEFNIFDHVLVPEHRILSEEEKEELLKKYRIRISQLPQIKASDPAVVALGAKPGDVIEIKRKSPTAGYYYYYRLVVED |
| DNA-directed RNA polymerase subunit K | K | 57 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MFRYTRFEKARIIGARALQIAMGAPVLIDVPEGITPLQAALLEFEKGVIPITVIRPS |
| DNA-directed RNA polymerase subunit L | L | 94 | Synechococcus Elongatus (Strain Atcc 33912 / Pcc 7942 / Fachb-805) | MRIEVIRREENLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKALEEAAQKIFDRAREVLEAWKAAIE |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-07-06 Deposition Author(s): Bartlett, M.S. , Cha, J.S. , Cho, H.-S. , Hyun, J. , Jeong, H. , Jun, S.-H. , Kim, H. , Murakami, K.S.