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FASTA Sequence PDB Format mmCIF Format
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6KC8

Crystal structure of wt nme1cas9 in complex with sgrna and target dna (atatgatt pam) in post-cleavage state

PDB DOI: 10.2210/pdb6kc8/pdb

Classification: HYDROLASE/RNA/DNA
Organism(s): Neisseria Meningitidis 8013 , Synthetic Construct

Deposited: 2019-06-27
Deposition Author(s): Cheng, Z. , Huang, X. , Liu, C. , Sun, W. , Wang, K. , Wang, Y. , Yang, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.9 Å

Literature

Crystal structure of wt nme1cas9 in complex with sgrna and target dna (atatgatt pam) in post-cleavage state

Cheng, Z. , Huang, X. , Liu, C. , Sun, W. , Wang, K. , Wang, Y. , Yang, J.

Primary Citation of Related Structures: 6KC8


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas9 A 1083 Neisseria Meningitidis 8013 , Synthetic Construct SMAAFKPNSINYILGLDIGIASVGWAMVEIDEEENPIRLIDLGVRVFERAEVPKTGDSLAMARRLARSVRRLTRRRAHRLLRTRRLLKREGVLQAANFDENGLIKSLPNTPWQLRAAALDRKLTPLEWSAVLLHLIKHRGYLSQRKNEGETADKELGALLKGVAGNAHALQTGDFRTPAELALNKFEKESGHIRNQRSDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSGDAVQKMLGHCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQARKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAISRALEKEGLKDKKSPLNLSPELQDEIGTAFSLFKTDEDITGRLKDRIQPEILEALLKHISFDKFVQISLKALRRIVPLMEQGKRYDEACAEIYGDHYGKKNTEEKIYLPPIPADEIRNPVVLRALSQARKVINGVVRRYGSPARIHIETAREVGKSFKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKCLYSGKEINLGRLNEKGYVEIDHALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFNGKDNSREWQEFKARVETSRFPRSKKQRILLQKFDEDGFKERNLNDTRYVNRFLCQFVADRMRLTGKGKKRVFASNGQITNLLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQKITRFVRYKEMNAFDGKTIDKETGEVLHQKTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTLEKLRTLLAEKLSSRPEAVHEYVTPLFVSRAPNRKMSGQGHMETVKSAKRLDEGVSVLRVPLTQLKLKDLEKMVNREREPKLYEALKARLEAHKDDPAKAFAEPFYKYDKAGNRTQQVKAVRVEQVQKTGVWVRNHNGIADNATMVRVDVFEKGDKYYLVPIYSWQVAKGILPDRAVVQGKDEEDWQLIDDSFNFKFSLHPNDLVEVITKKARMFGYFASCHRGTGNINIRIHDLDHKIGKNGILEGIGVKTALSFQKYQIDELGKEIRPCRLKKRPPVR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA b 135 NA GGUCACUCUGCUAUUUAACUUUACGUUGUAGCUCCCUUUCUCGAAAGAGAACCGUUGCUACAAUAAGGCCGUCUGAAAAGAUGUGCCGCAACGCUCUGCCCCUUAAAGCUCCUGCUUUAAGGGGCAUCGUUUAUC
DNA (5'-D(P*AP*AP*GP*TP*TP*AP*AP*AP*TP*AP*GP*CP*AP*GP*AP*GP*TP*GP*AP*CP*C)-3') c 21 NA AAGTTAAATAGCAGAGTGACC
DNA (5'-D(*AP*TP*AP*TP*GP*AP*TP*TP*TP*TP*A)-3') d 11 NA ATATGATTTTA
DNA (5'-D(*TP*AP*AP*AP*AP*TP*CP*AP*TP*AP*TP*GP*TP*A)-3') p 14 NA TAAAATCATATGTA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-06-27
Deposition Author(s): Cheng, Z. , Huang, X. , Liu, C. , Sun, W. , Wang, K. , Wang, Y. , Yang, J.