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6KBZ

Crystal structure of yedk with ssdna containing a tetrahydrofuran abasic site

PDB DOI: 10.2210/pdb6kbz/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Escherichia Coli , Synthetic Construct

Deposited: 2019-06-26
Deposition Author(s): Bao, H. , Huang, H. , Wang, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.653 Å

Literature

Crystal structure of yedk with ssdna containing a tetrahydrofuran abasic site

Bao, H. , Huang, H. , Wang, N.

Primary Citation of Related Structures: 6KBZ


Proteins
Molecule Chains Sequence Length Organism Sequence
SOS response-associated protein B 227 Escherichia Coli , Synthetic Construct CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ
SOS response-associated protein D 227 Escherichia Coli , Synthetic Construct CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ
SOS response-associated protein F 227 Escherichia Coli , Synthetic Construct CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ
SOS response-associated protein H 227 Escherichia Coli , Synthetic Construct CGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKVLLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADGWFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIHDRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAELIQPVLEVLFQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5'-D (*CP*GP*GP*TP* (3DR) P*GP*AP*TP*TP*C)-3' a 10 NA CGGTNGATTC
5'-D (*CP*GP*GP*TP* (3DR) P*GP*AP*TP*TP*C)-3' c 10 NA CGGTNGATTC
5'-D (*CP*GP*GP*TP* (3DR) P*GP*AP*TP*TP*C)-3' e 10 NA CGGTNGATTC
5'-D (*CP*GP*GP*TP* (3DR) P*GP*AP*TP*TP*C)-3' g 10 NA CGGTNGATTC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-06-26
Deposition Author(s): Bao, H. , Huang, H. , Wang, N.