6KAD
Cryo-em structure of the c2s2m2l2-type psii-lhcii supercomplex from chlamydomonas reihardtii
PDB DOI: 10.2210/pdb6kad/pdb
Classification: PHOTOSYNTHESIS Organism(s): Cupriavidus Necator H16
Deposited: 2019-06-21 Deposition Author(s): Kim, E. , Li, A.J. , Liu, Z.F. , Minagawa, J. , Murata, K. , Sheng, X. , Song, C. , Song, D.F. , Watanabe, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.4 Å
Cryo-em structure of the c2s2m2l2-type psii-lhcii supercomplex from chlamydomonas reihardtii
Kim, E. , Li, A.J. , Liu, Z.F. , Minagawa, J. , Murata, K. , Sheng, X. , Song, C. , Song, D.F. , Watanabe, A.
Primary Citation of Related Structures: 6KAD
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Chlorophyll a-b binding protein, chloroplastic | 1 | 256 | Cupriavidus Necator H16 | MAFALAKSSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTPQ |
| Chlorophyll a-b binding protein, chloroplastic | 6 | 256 | Cupriavidus Necator H16 | MAFALAKSSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTPQ |
| Chlorophyll a-b binding protein, chloroplastic | Y | 256 | Cupriavidus Necator H16 | MAFALAKSSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTPQ |
| Chlorophyll a-b binding protein, chloroplastic | 0 | 256 | Cupriavidus Necator H16 | MAFALAKSSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTPQ |
| Chlorophyll a-b binding protein, chloroplastic | 7 | 256 | Cupriavidus Necator H16 | MAFALAKSSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTPQ |
| Photosystem II reaction center protein H | H | 88 | Cupriavidus Necator H16 | MATGTSKAKPSKVNSDFQEPGLVTPLGTLLRPLNSEAGKVLPGWGTTVLMAVFILLFAAFLLIILEIYNSSLILDDVSMSWETLAKVS |
| Photosystem II reaction center protein I | I | 37 | Cupriavidus Necator H16 | MLTLKIFVYTVVTFFVCLFIFGFLSNDPARNPGKNLD |
| Photosystem II reaction center protein J | J | 42 | Cupriavidus Necator H16 | MSNTGTTGRIPLWLVGTVVGTLAIGLLAVFFYGSYVGLGSSL |
| Photosystem II reaction center protein K | K | 46 | Cupriavidus Necator H16 | MTTLALVLAKLPEAYAPFAPIVDVLPVIPVFFILLAFVWQAAVSFR |
| Photosystem II reaction center protein L | L | 38 | Cupriavidus Necator H16 | MARPNPNKQVVELNRTSLYWGLLLIFVLAVLFSSYIFN |
| Photosystem II reaction center protein M | M | 34 | Cupriavidus Necator H16 | MEVNIYGLTATALFIIIPTSFLLILYVKTASTQD |
| Oxygen-evolving enhancer protein 1, chloroplastic | O | 291 | Cupriavidus Necator H16 | MALRAAQSAKAGVRAARPNRATAVVCKAQKVGQAAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDGIKGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPARADAEELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK |
| Chlorophyll a-b binding protein CP29 | R | 280 | Cupriavidus Necator H16 | MVFKFPTPPGTQKKAGTTATKPAPKATTKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELDGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAKFADGLNNGKGL |
| Chlorophyll a-b binding protein, chloroplastic | S | 289 | Cupriavidus Necator H16 | MQIQALFKKTGASAPAKKGTASTKVVKPSKAGGKATRGWLGGQGGAADLDKWYGPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLGAEERTPTL |
| Photosystem II reaction center protein T | T | 31 | Cupriavidus Necator H16 | MEALVYTFLLVGTLGIIFFSIFFRDPPRMIK |
| Chlorophyll a-b binding protein, chloroplastic | 2 | 257 | Cupriavidus Necator H16 | MAFALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTPSA |
| Chlorophyll a-b binding protein, chloroplastic | 3 | 257 | Cupriavidus Necator H16 | MAFALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTPSA |
| Chlorophyll a-b binding protein, chloroplastic | 5 | 257 | Cupriavidus Necator H16 | MAFALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTPSA |
| Chlorophyll a-b binding protein, chloroplastic | N | 257 | Cupriavidus Necator H16 | MAFALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTPSA |
| Chlorophyll a-b binding protein, chloroplastic | 8 | 257 | Cupriavidus Necator H16 | MAFALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTPSA |
| Chlorophyll a-b binding protein, chloroplastic | 9 | 257 | Cupriavidus Necator H16 | MAFALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTPSA |
| Chlorophyll a-b binding protein, chloroplastic | P | 257 | Cupriavidus Necator H16 | MAFALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTPSA |
| Photosystem II reaction center protein Ycf12 | V | 33 | Cupriavidus Necator H16 | MNIELALTLVSLVLVVSAGPLVVVLLSARGGNL |
| Photosystem II reaction center W protein, chloroplastic | W | 115 | Cupriavidus Necator H16 | MQALSARAPRVAAKPVSRSGARSAVTVVCKATTVRSEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL |
| 4.1 kDa photosystem II subunit | X | 101 | Cupriavidus Necator H16 | MAAVCVSSKAVAVRPATRVASRPAARMVVRASAKPAQISEKAIAAGVSAAAAASLALAPIAEAAVTPSLKNFLGSLIAGATVLGGIALAITAVSKFDKTIR |
| Photosystem II reaction center protein Z | Z | 62 | Cupriavidus Necator H16 | MTSILQVALLALIFVSFALVVGVPVVFATPNGWTDNKGAVFSGLSLWLLLVFVVGILNSFVV |
| Chlorophyll a-b binding protein, chloroplastic | 4 | 249 | Cupriavidus Necator H16 | MAAIMKSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTPSA |
| Chlorophyll a-b binding protein, chloroplastic | G | 249 | Cupriavidus Necator H16 | MAAIMKSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTPSA |
| Chlorophyll a-b binding protein, chloroplastic | Q | 249 | Cupriavidus Necator H16 | MAAIMKSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTPSA |
| Photosystem II protein D1 | A | 352 | Cupriavidus Necator H16 | MTAILERRENSSLWARFCEWITSTENRLYIGWFGVIMIPCLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVIPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFLLGVYCYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGLSTMAFNLNGFNFNQSVVDSQGRVLNTWADIINRANLGMEVMHERNAHNFPLDLASTNSSSNN |
| Photosystem II CP47 reaction center protein | B | 508 | Cupriavidus Necator H16 | MGLPWYRVHTVVINDPGRLISVHLMHTALVSGWAGSMALFEISVFDPSDPVLNPMWRQGMFVLPFMTRLGITQSWGGWTISGETATNPGIWSYEGVAAAHIILSGALFLASVWHWTYWDLELFRDPRTGKTALDLPKIFGIHLFLSGLLCFGFGAFHVTGVFGPGIWVSDPYGLTGRVQPVAPSWGADGFDPYNPGGIASHHIAAGILGVLAGLFHLCVRPSIRLYFGLSMGSIETVLSSSIAAVFWAAFVVAGTMWYGSAATPIELFGPTRYQWDQGFFQQEIQKRVQASLAEGASLSDAWSRIPEKLAFYDYIGNNPAKGGLFRTGAMNSGDGIAVGWLGHASFKDQEGRELFVRRMPTFFETFPVLLLDKDGIVRADVPFRKAESKYSIEQVGVSVTFYGGELDGLTFTDPATVKKYARKAQLGEIFEFDRSTLQSDGVFRSSPRGWFTFGHVCFALLFFFGHIWHGARTIFRDVFAGIDDDINDQVEFGKYKKLGDTSSLREAF |
| Photosystem II CP43 reaction center protein | C | 461 | Cupriavidus Necator H16 | METLFNGTLTVGGRDQETTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVSHFVPEKPMYEQGLILLPHIATLGYGVGPGGEIIDTFPYFVSGVLHLISSAVLGFGGVYHSLIGPETLEESYPFFGYVWKDKNKMTNILGYHLIMLGLGAWLLVWKAMYFGGVYDTWAPGGGDVRVITNPTTNAAVIFGYLVKSPFGGDGWICSVDNMEDIIGGHIWIGTLEILGGIWHIYTTPWPWARRAFVWSGEAYLSYSLGAIGVMGFIACCMSWFNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNFVSPRSWLACSHFCLGFFFFIGHLWHAGRARAAAAGFEKGIDRFDEPVLSMRPLD |
| Photosystem II D2 protein | D | 352 | Cupriavidus Necator H16 | MTIAIGTYQEKRTWFDDADDWLRQDRFVFVGWSGLLLFPCAYFALGGWLTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPANSMAHSLLFVWGPEAQGDFTRWCQLGGLWAFVALHGAFGLIGFMLRQFEIARSVNLRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLLVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHERLVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 82 | Cupriavidus Necator H16 | MAGKPVERPFSDILTSIRYWVIHSITVPALFIAGWLFVSTGLAYDVFGTPRPNEYFTEDRQEAPLITDRFNALEQVKKLSGN |
| Cytochrome b559 subunit beta | F | 44 | Cupriavidus Necator H16 | MTTKKSAEVLVYPIFTVRWLAIHGIAVPTIFFLGAITAMQFIQR |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-06-21 Deposition Author(s): Kim, E. , Li, A.J. , Liu, Z.F. , Minagawa, J. , Murata, K. , Sheng, X. , Song, C. , Song, D.F. , Watanabe, A.