6KAC
Cryo-em structure of the c2s2-type psii-lhcii supercomplex from chlamydomonas reihardtii
PDB DOI: 10.2210/pdb6kac/pdb
Classification: PHOTOSYNTHESIS Organism(s): Chlamydomonas Reinhardtii
Deposited: 2019-06-21 Deposition Author(s): Li, A.J. , Liu, Z.F. , Sheng, X. , Song, D.F.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.7 Å
Cryo-em structure of the c2s2-type psii-lhcii supercomplex from chlamydomonas reihardtii
Li, A.J. , Liu, Z.F. , Sheng, X. , Song, D.F.
Primary Citation of Related Structures: 6KAC
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 | A | 352 | Chlamydomonas Reinhardtii | MTAILERRENSSLWARFCEWITSTENRLYIGWFGVIMIPCLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAVIPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFLLGVYCYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGLSTMAFNLNGFNFNQSVVDSQGRVLNTWADIINRANLGMEVMHERNAHNFPLDLASTNSSSNN |
| Photosystem II reaction center protein J | J | 42 | Chlamydomonas Reinhardtii | MSNTGTTGRIPLWLVGTVVGTLAIGLLAVFFYGSYVGLGSSL |
| Photosystem II reaction center protein K | K | 46 | Chlamydomonas Reinhardtii | MTTLALVLAKLPEAYAPFAPIVDVLPVIPVFFILLAFVWQAAVSFR |
| Photosystem II reaction center protein L | L | 38 | Chlamydomonas Reinhardtii | MARPNPNKQVVELNRTSLYWGLLLIFVLAVLFSSYIFN |
| Photosystem II reaction center protein M | M | 34 | Chlamydomonas Reinhardtii | MEVNIYGLTATALFIIIPTSFLLILYVKTASTQD |
| Oxygen-evolving enhancer protein 1, chloroplastic | O | 291 | Chlamydomonas Reinhardtii | MALRAAQSAKAGVRAARPNRATAVVCKAQKVGQAAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLFTIKQFDGKGTLDGIKGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPARADAEELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAKPPKDIKVTGLWYAQLK |
| Oxygen-evolving enhancer protein 2, chloroplastic | P | 245 | Chlamydomonas Reinhardtii | MATALCNKAFAAAPVARPASRRSAVVVRASGSDVSRRAALAGFAGAAALVSSSPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGDKRWFKGAKKEAMGAFDSFTVV |
| Oxygen-evolving enhancer protein 3, chloroplastic | Q | 199 | Chlamydomonas Reinhardtii | MALASKVATRPAVASRRGAVVVRASGESRRAVLGGLLASAVAAVAPKAALALTPVDLFDDRSVRDRGFDLIYEARDLDLPQNVREGFTQARASLDETKKRVKESEARIDADLDVFIQKSYWTEAREQLRRQVGTLRFDLNTLASTKEKEAKKAALGLRKEFIQAVEDLDFALREKDQASAAKKLEITKAKLDSVLAAVL |
| Photosystem II reaction center protein T | T | 31 | Chlamydomonas Reinhardtii | MEALVYTFLLVGTLGIIFFSIFFRDPPRMIK |
| Photosystem II reaction center W protein, chloroplastic | W | 115 | Chlamydomonas Reinhardtii | MQALSARAPRVAAKPVSRSGARSAVTVVCKATTVRSEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFGVNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL |
| 4.1 kDa photosystem II subunit | X | 101 | Chlamydomonas Reinhardtii | MAAVCVSSKAVAVRPATRVASRPAARMVVRASAKPAQISEKAIAAGVSAAAAASLALAPIAEAAVTPSLKNFLGSLIAGATVLGGIALAITAVSKFDKTIR |
| Photosystem II CP47 reaction center protein | B | 508 | Chlamydomonas Reinhardtii | MGLPWYRVHTVVINDPGRLISVHLMHTALVSGWAGSMALFEISVFDPSDPVLNPMWRQGMFVLPFMTRLGITQSWGGWTISGETATNPGIWSYEGVAAAHIILSGALFLASVWHWTYWDLELFRDPRTGKTALDLPKIFGIHLFLSGLLCFGFGAFHVTGVFGPGIWVSDPYGLTGRVQPVAPSWGADGFDPYNPGGIASHHIAAGILGVLAGLFHLCVRPSIRLYFGLSMGSIETVLSSSIAAVFWAAFVVAGTMWYGSAATPIELFGPTRYQWDQGFFQQEIQKRVQASLAEGASLSDAWSRIPEKLAFYDYIGNNPAKGGLFRTGAMNSGDGIAVGWLGHASFKDQEGRELFVRRMPTFFETFPVLLLDKDGIVRADVPFRKAESKYSIEQVGVSVTFYGGELDGLTFTDPATVKKYARKAQLGEIFEFDRSTLQSDGVFRSSPRGWFTFGHVCFALLFFFGHIWHGARTIFRDVFAGIDDDINDQVEFGKYKKLGDTSSLREAF |
| Photosystem II reaction center protein Z | Z | 62 | Chlamydomonas Reinhardtii | MTSILQVALLALIFVSFALVVGVPVVFATPNGWTDNKGAVFSGLSLWLLLVFVVGILNSFVV |
| Chlorophyll a-b binding protein, chloroplastic | N | 257 | Chlamydomonas Reinhardtii | MAFALSFSRKALQVSAKATGKKGTGKTAAKQAPASSGIEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPTVNNAFAFATKFTPSA |
| Chlorophyll a-b binding protein, chloroplastic | G | 249 | Chlamydomonas Reinhardtii | MAAIMKSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYATKFTPSA |
| Chlorophyll a-b binding protein CP29 | R | 280 | Chlamydomonas Reinhardtii | MVFKFPTPPGTQKKAGTTATKPAPKATTKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELDGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAKFADGLNNGKGL |
| Chlorophyll a-b binding protein, chloroplastic | S | 289 | Chlamydomonas Reinhardtii | MQIQALFKKTGASAPAKKGTASTKVVKPSKAGGKATRGWLGGQGGAADLDKWYGPDRKLFLPSGLYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANIKGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVLGAEERTPTL |
| Chlorophyll a-b binding protein, chloroplastic | Y | 256 | Chlamydomonas Reinhardtii | MAFALAKSSARAAVSRRSTVKVEARRTVKPASKASTPDSFWYGPERPLFLGAFTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGTNNAFAYATKFTPQ |
| Predicted protein | U | 178 | Chlamydomonas Reinhardtii | MASITCSSGKAAVVSRAKTARPVARRMSVVASAAPQGNASRRELLGLSAVAASLLLSSRPAHAIFGFADDNTALFDTYTAETSAILDKVKVTLALDKDDPAKEDSVKGLRKDINNWVAKYRREPKVSGKPSFGNTYSALNALAGHFNSFGATAPIPKKRLERLQKELDDATLLLTRNR |
| 10 kDa photosystem II polypeptide PsbR (potential) | 1 | 25 | Chlamydomonas Reinhardtii | GAAGAAAAAGAAAAAAAAGAAAAAA |
| 10 kDa photosystem II polypeptide PsbR (potential) | 0 | 25 | Chlamydomonas Reinhardtii | GAAGAAAAAGAAAAAAAAGAAAAAA |
| Unindentified Stromal Protein (USP) | 4 | 25 | Chlamydomonas Reinhardtii | AWAAAAGAAGAGYGVYRYEAAYGAA |
| Unindentified Stromal Protein (USP) | 3 | 25 | Chlamydomonas Reinhardtii | AWAAAAGAAGAGYGVYRYEAAYGAA |
| Photosystem II reaction center protein Ycf12 | V | 33 | Chlamydomonas Reinhardtii | MNIELALTLVSLVLVVSAGPLVVVLLSARGGNL |
| Photosystem II CP43 reaction center protein | C | 461 | Chlamydomonas Reinhardtii | METLFNGTLTVGGRDQETTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVSHFVPEKPMYEQGLILLPHIATLGYGVGPGGEIIDTFPYFVSGVLHLISSAVLGFGGVYHSLIGPETLEESYPFFGYVWKDKNKMTNILGYHLIMLGLGAWLLVWKAMYFGGVYDTWAPGGGDVRVITNPTTNAAVIFGYLVKSPFGGDGWICSVDNMEDIIGGHIWIGTLEILGGIWHIYTTPWPWARRAFVWSGEAYLSYSLGAIGVMGFIACCMSWFNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNFVSPRSWLACSHFCLGFFFFIGHLWHAGRARAAAAGFEKGIDRFDEPVLSMRPLD |
| Photosystem II D2 protein | D | 352 | Chlamydomonas Reinhardtii | MTIAIGTYQEKRTWFDDADDWLRQDRFVFVGWSGLLLFPCAYFALGGWLTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPANSMAHSLLFVWGPEAQGDFTRWCQLGGLWAFVALHGAFGLIGFMLRQFEIARSVNLRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLLVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHERLVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 82 | Chlamydomonas Reinhardtii | MAGKPVERPFSDILTSIRYWVIHSITVPALFIAGWLFVSTGLAYDVFGTPRPNEYFTEDRQEAPLITDRFNALEQVKKLSGN |
| Cytochrome b559 subunit beta | F | 44 | Chlamydomonas Reinhardtii | MTTKKSAEVLVYPIFTVRWLAIHGIAVPTIFFLGAITAMQFIQR |
| Photosystem II reaction center protein H | H | 88 | Chlamydomonas Reinhardtii | MATGTSKAKPSKVNSDFQEPGLVTPLGTLLRPLNSEAGKVLPGWGTTVLMAVFILLFAAFLLIILEIYNSSLILDDVSMSWETLAKVS |
| Photosystem II reaction center protein I | I | 37 | Chlamydomonas Reinhardtii | MLTLKIFVYTVVTFFVCLFIFGFLSNDPARNPGKNLD |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2019-06-21 Deposition Author(s): Li, A.J. , Liu, Z.F. , Sheng, X. , Song, D.F.