PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6K3Z

Crystal structure of dcas9 in complex with sgrna and dna (tga pam)

PDB DOI: 10.2210/pdb6k3z/pdb

Classification: HYDROLASE/DNA/RNA
Organism(s): Streptococcus Pyogenes Serotype M1 , Synthetic Construct

Deposited: 2019-05-22
Deposition Author(s): Chen, W. , Gan, J. , Ji, Q. , Wang, Y. , Zhang, H. , Zhang, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.2 Å

6k3z
Literature

Crystal structure of dcas9 in complex with sgrna and dna (tga pam)

Chen, W. , Gan, J. , Ji, Q. , Wang, Y. , Zhang, H. , Zhang, Y.

Primary Citation of Related Structures: 6K3Z


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (81-MER) a 83 NA GGAUAACUCAAUUUGUAAAAAAGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUG
DNA (28-MER) c 28 NA CAATATCATTTTTTACAAATTGAGTTAT
DNA (5'-D(*AP*AP*AP*TP*GP*AP*TP*AP*TP*TP*G)-3') d 12 NA AAAATGATATTG

Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas9 B 1368 Streptococcus Pyogenes Serotype M1 , Synthetic Construct MDKKYSIGLAIGTNSVGWAVITDEYKVPSKKFKVLGNTDRHSIKKNLIGALLFDSGETAEATRLKRTARRRYTRRKNRICYLQEIFSNEMAKVDDSFFHRLEESFLVEEDKKHERHPIFGNIVDEVAYHEKYPTIYHLRKKLVDSTDKADLRLIYLALAHMIKFRGHFLIEGDLNPDNSDVDKLFIQLVQTYNQLFEENPINASGVDAKAILSARLSKSRRLENLIAQLPGEKKNGLFGNLIALSLGLTPNFKSNFDLAEDAKLQLSKDTYDDDLDNLLAQIGDQYADLFLAAKNLSDAILLSDILRVNTEITKAPLSASMIKRYDEHHQDLTLLKALVRQQLPEKYKEIFFDQSKNGYAGYIDGGASQEEFYKFIKPILEKMDGTEELLVKLNREDLLRKQRTFDNGSIPHQIHLGELHAILRRQEDFYPFLKDNREKIEKILTFRIPYYVGPLARGNSRFAWMTRKSEETITPWNFEEVVDKGASAQSFIERMTNFDKNLPNEKVLPKHSLLYEYFTVYNELTKVKYVTEGMRKPAFLSGEQKKAIVDLLFKTNRKVTVKQLKEDYFKKIECFDSVEISGVEDRFNASLGTYHDLLKIIKDKDFLDNEENEDILEDIVLTLTLFEDREMIEERLKTYAHLFDDKVMKQLKRRRYTGWGRLSRKLINGIRDKQSGKTILDFLKSDGFANRNFMQLIHDDSLTFKEDIQKAQVSGQGDSLHEHIANLAGSPAIKKGILQTVKVVDELVKVMGRHKPENIVIEMARENQTTQKGQKNSRERMKRIEEGIKELGSQILKEHPVENTQLQNEKLYLYYLQNGRDMYVDQELDINRLSDYDVDAIVPQSFLKDDSIDNKVLTRSDKNRGKSDNVPSEEVVKKMKNYWRQLLNAKLITQRKFDNLTKAERGGLSELDKAGFIKRQLVETRQITKHVAQILDSRMNTKYDENDKLIREVKVITLKSKLVSDFRKDFQFYKVREINNYHHAHDAYLNAVVGTALIKKYPKLESEFVYGDYKVYDVRKMIAKSEQEIGKATAKYFFYSNIMNFFKTEITLANGEIRKRPLIETNGETGEIVWDKGRDFATVRKVLSMPQVNIVKKTEVQTGGFSKESILPKRNSDKLIARKKDWDPKKYGGFDSPTVAYSVLVVAKVEKGKSKKLKSVKELLGITIMERSSFEKNPIDFLEAKGYKEVKKDLIIKLPKYSLFELENGRKRMLASAGELQKGNELALPSKYVNFLYLASHYEKLKGSPEDNEQKQLFVEQHKHYLDEIIEQISEFSKRVILADANLDKVLSAYNKHRDKPIREQAENIIHLFTLTNLGAPAAFKYFDTTIDRKRYTSTKEVLDATLIHQSITGLYETRIDLSQLGGD
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-05-22
Deposition Author(s): Chen, W. , Gan, J. , Ji, Q. , Wang, Y. , Zhang, H. , Zhang, Y.