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6JMA

Cryo-em structure of dot1l bound to h2b ubiquitinated nucleosome

PDB DOI: 10.2210/pdb6jma/pdb

Classification: GENE REGULATION
Organism(s): Homo Sapiens , Synthetic Construct , Xenopus Laevis

Deposited: 2019-03-07
Deposition Author(s): Jang, S. , Song, J.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 6.8 Å

6jma
Literature

Cryo-em structure of dot1l bound to h2b ubiquitinated nucleosome

Jang, S. , Song, J.J.

Primary Citation of Related Structures: 6JMA


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA I&J i 114 NA AGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCT
DNA I&J j 114 NA AGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCT

Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 98 Homo Sapiens , Synthetic Construct , Xenopus Laevis PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 98 Homo Sapiens , Synthetic Construct , Xenopus Laevis PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 87 Homo Sapiens , Synthetic Construct , Xenopus Laevis KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 87 Homo Sapiens , Synthetic Construct , Xenopus Laevis KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 116 Homo Sapiens , Synthetic Construct , Xenopus Laevis AKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2A G 116 Homo Sapiens , Synthetic Construct , Xenopus Laevis AKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK
Histone H2B 1.1 D 94 Homo Sapiens , Synthetic Construct , Xenopus Laevis TRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 94 Homo Sapiens , Synthetic Construct , Xenopus Laevis TRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone-lysine N-methyltransferase, H3 lysine-79 specific X 328 Homo Sapiens , Synthetic Construct , Xenopus Laevis LELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSWTGKPVSYYLHTIDRTILENYFSSLKNP
Ubiquitin Y 76 Homo Sapiens , Synthetic Construct , Xenopus Laevis MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-03-07
Deposition Author(s): Jang, S. , Song, J.J.