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6JM9

Cryo-em structure of dot1l bound to unmodified nucleosome

PDB DOI: 10.2210/pdb6jm9/pdb

Classification: GENE REGULATION
Organism(s): Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603

Deposited: 2019-03-07
Deposition Author(s): Jang, S. , Song, J.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 7.3 Å

6jm9
Literature

Cryo-em structure of dot1l bound to unmodified nucleosome

Jang, S. , Song, J.J.

Primary Citation of Related Structures: 6JM9


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA strand I i 123 NA CACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGC
DNA strand J j 123 NA GCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTG

Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 98 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 98 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 87 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 87 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 KRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A C 107 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 AKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT
Histone H2A G 107 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 AKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKT
Histone H2B 1.1 D 94 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 TRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B 1.1 H 94 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 TRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone-lysine N-methyltransferase, H3 lysine-79 specific X 328 Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 LELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSWTGKPVSYYLHTIDRTILENYFSSLKNP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-03-07
Deposition Author(s): Jang, S. , Song, J.J.