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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6JJO

Crystal structure of the degp dodecamer with a modulator

PDB DOI: 10.2210/pdb6jjo/pdb

Classification: HYDROLASE
Organism(s): Escherichia Coli K-12 , Synthetic Construct

Deposited: 2019-02-26
Deposition Author(s): Cho, H. , Choi, Y. , Kim, S. , Lee, H.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.157 Å

Literature

Crystal structure of the degp dodecamer with a modulator

Cho, H. , Choi, Y. , Kim, S. , Lee, H.H.

Primary Citation of Related Structures: 6JJO


Proteins
Molecule Chains Sequence Length Organism Sequence
Periplasmic serine endoprotease DegP A 469 Escherichia Coli K-12 , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP B 469 Escherichia Coli K-12 , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP C 469 Escherichia Coli K-12 , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP D 469 Escherichia Coli K-12 , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP E 469 Escherichia Coli K-12 , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP F 469 Escherichia Coli K-12 , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
TMB-CYRKL modulator G 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator M 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator H 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator N 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator I 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator O 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator J 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator P 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator K 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator Q 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator L 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
TMB-CYRKL modulator R 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-02-26
Deposition Author(s): Cho, H. , Choi, Y. , Kim, S. , Lee, H.H.