Crystal structure of the degp dodecamer with a modulator
PDB DOI: 10.2210/pdb6jjo/pdb
Classification: HYDROLASE Organism(s): Escherichia Coli K-12 , Synthetic Construct
Deposited: 2019-02-26 Deposition Author(s): Cho, H. , Choi, Y. , Kim, S. , Lee, H.H.
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Periplasmic serine endoprotease DegP | A | 469 | Escherichia Coli K-12 , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
Periplasmic serine endoprotease DegP | B | 469 | Escherichia Coli K-12 , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
Periplasmic serine endoprotease DegP | C | 469 | Escherichia Coli K-12 , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
Periplasmic serine endoprotease DegP | D | 469 | Escherichia Coli K-12 , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
Periplasmic serine endoprotease DegP | E | 469 | Escherichia Coli K-12 , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
Periplasmic serine endoprotease DegP | F | 469 | Escherichia Coli K-12 , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMAETSSATTAQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ |
TMB-CYRKL modulator | G | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | M | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | H | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | N | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | I | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | O | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | J | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | P | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | K | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | Q | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | L | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
TMB-CYRKL modulator | R | 5 | Escherichia Coli K-12 , Synthetic Construct | CYRKL |
Method: X-RAY DIFFRACTION