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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6JJL

Crystal structure of the degp dodecamer with a modulator

PDB DOI: 10.2210/pdb6jjl/pdb

Classification: HYDROLASE
Organism(s): Escherichia Coli K-12 , Synthetic Construct

Deposited: 2019-02-26
Deposition Author(s): Cho, H. , Choi, Y. , Kim, S. , Lee, H.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 4.2 Å

6jjl
Literature

Crystal structure of the degp dodecamer with a modulator

Cho, H. , Choi, Y. , Kim, S. , Lee, H.H.

Primary Citation of Related Structures: 6JJL


Proteins
Molecule Chains Sequence Length Organism Sequence
Periplasmic serine endoprotease DegP A 440 Escherichia Coli K-12 , Synthetic Construct AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP B 440 Escherichia Coli K-12 , Synthetic Construct AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP C 440 Escherichia Coli K-12 , Synthetic Construct AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP D 440 Escherichia Coli K-12 , Synthetic Construct AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP E 440 Escherichia Coli K-12 , Synthetic Construct AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
Periplasmic serine endoprotease DegP F 440 Escherichia Coli K-12 , Synthetic Construct AQQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSVLALNIQRGDSTIYLLMQ
CYS-TYR-ARG-LYS-LEU G 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU M 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU H 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU N 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU I 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU Q 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU J 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU O 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU K 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU R 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU L 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
CYS-TYR-ARG-LYS-LEU P 5 Escherichia Coli K-12 , Synthetic Construct CYRKL
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-02-26
Deposition Author(s): Cho, H. , Choi, Y. , Kim, S. , Lee, H.H.