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6JE3

Crystal structure of nme2cas9 in complex with sgrna and target dna (aggccc pam) with 5 nt overhang

PDB DOI: 10.2210/pdb6je3/pdb

Classification: HYDROLASE/RNA/DNA
Organism(s): Neisseria Meningitidis , Synthetic Construct

Deposited: 2019-02-03
Deposition Author(s): Cheng, Z. , Huang, X. , Liu, C. , Sun, W. , Wang, K. , Wang, Y. , Yang, J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.931 Å

Literature

Crystal structure of nme2cas9 in complex with sgrna and target dna (aggccc pam) with 5 nt overhang

Cheng, Z. , Huang, X. , Liu, C. , Sun, W. , Wang, K. , Wang, Y. , Yang, J.

Primary Citation of Related Structures: 6JE3


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas9 A 1083 Neisseria Meningitidis , Synthetic Construct SMAAFKPNPINYILGLAIGIASVGWAMVEIDEEENPIRLIDLGVRVFERAEVPKTGDSLAMARRLARSVRRLTRRRAHRLLRARRLLKREGVLQAADFDENGLIKSLPNTPWQLRAAALDRKLTPLEWSAVLLHLIKHRGYLSQRKNEGETADKELGALLKGVANNAHALQTGDFRTPAELALNKFEKESGHIRNQRGDYSHTFSRKDLQAELILLFEKQKEFGNPHVSGGLKEGIETLLMTQRPALSGDAVQKMLGHCTFEPAEPKAAKNTYTAERFIWLTKLNNLRILEQGSERPLTDTERATLMDEPYRKSKLTYAQARKLLGLEDTAFFKGLRYGKDNAEASTLMEMKAYHAISRALEKEGLKDKKSPLNLSSELQDEIGTAFSLFKTDEDITGRLKDRVQPEILEALLKHISFDKFVQISLKALRRIVPLMEQGKRYDEACAEIYGDHYGKKNTEEKIYLPPIPADEIRNPVVLRALSQARKVINGVVRRYGSPARIHIETAREVGKSFKDRKEIEKRQEENRKDREKAAAKFREYFPNFVGEPKSKDILKLRLYEQQHGKCLYSGKEINLVRLNEKGYVEIDAALPFSRTWDDSFNNKVLVLGSENQNKGNQTPYEYFNGKDNSREWQEFKARVETSRFPRSKKQRILLQKFDEDGFKECNLNDTRYVNRFLCQFVADHILLTGKGKRRVFASNGQITNLLRGFWGLRKVRAENDRHHALDAVVVACSTVAMQQKITRFVRYKEMNAFDGKTIDKETGKVLHQKTHFPQPWEFFAQEVMIRVFGKPDGKPEFEEADTPEKLRTLLAEKLSSRPEAVHEYVTPLFVSRAPNRKMSGAHKDTLRSAKRFVKHNEKISVKRVWLTEIKLADLENMVNYKNGREIELYEALKARLEAYGGNAKQAFDPKDNPFYKKGGQLVKAVRVEKTQESGVLLNKKNAYTIADNGDMVRVDVFCKVDKKGKNQYFIVPIYAWQVAENILPDIDCKGYRIDDSYTFCFSLHKYDLIAFQKDEKSKVEFAYYINCDSSNGRFYLAWHDKGSKEQQFRISTQNLVLIQKYQVNELGKEIRPCRLKKRPPVR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA b 135 NA GGUCACUCUGCUAUUUAACUUUACGUUGUAGCUCCCUUUCUCGAAAGAGAACCGUUGCUACAAUAAGGCCGUCUGAAAAGAUGUGCCGCAACGCUCUGCCCCUUAAAGCUCCUGCUUUAAGGGGCAUCGUUUAUC
target DNA strand c 35 NA TAACTGGGCCTGTAAAGTTAAATAGCAGAGTGACC
non-target DNA strand d 16 NA AAATGAGGCCCAGTTA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2019-02-03
Deposition Author(s): Cheng, Z. , Huang, X. , Liu, C. , Sun, W. , Wang, K. , Wang, Y. , Yang, J.