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FASTA Sequence PDB Format mmCIF Format
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6J3Z

Structure of c2s1m1-type psii-fcpii supercomplex from diatom

PDB DOI: 10.2210/pdb6j3z/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Chaetoceros Gracilis

Deposited: 2019-01-07
Deposition Author(s): Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

6j3z
Literature

Structure of c2s1m1-type psii-fcpii supercomplex from diatom

Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.

Primary Citation of Related Structures: 6J3Z


Proteins
Molecule Chains Sequence Length Organism Sequence
Photosystem II reaction center protein D1 A 344 Chaetoceros Gracilis MTATLERREGVSLWERFCAWITSTENRLYIGWFGCLMFPTLLTATSCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGMHFYPIWEAASIDEWLYNGGPYQLIVLHFLLGVSAYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWITSMGISTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGIEVMHERNAHNFPLDLA
Photosystem II reaction center protein K K 44 Chaetoceros Gracilis MESLLLARLPEAYVVFSPIVDVLPIIPVFFLLLAFVWQAAIGFR
Photosystem II reaction center protein L L 38 Chaetoceros Gracilis MTGPNPNKQAVELNRTSLYWGLLLIFVLAVLFSSYFFN
Photosystem II reaction center protein M M 131 Chaetoceros Gracilis LHLTVVSEVGKVAVGSIPAAAIASPAFAMDSVVESLPTNMLAGEVQFGAYLAVLLGTFLPALFLVNLFIQTEARKAGKAGGQDSDLDGYLCIRVWIAIEAGRLSSHLWCPLVLPHFWRNNRTVSHLYGRYQ
Extrinsic protein in photosystem II O 248 Chaetoceros Gracilis LTKSQINELSYLQVKGTGLANRCAEVVGEDSIKPKPGAKLVDMCIEPKAWAVEEEVGKAGKTEKKFVNSKVMTRQTYTLDAIEGPITVDGGKITFNEKEGIDYAATTVQLPGGERVPFLFTVKDLVAKGNGDTFKPGFQMGGDFNTPSYRTGLFLDPKGRGGTTGYDMAVALPALQLGEEGDAELFGENNKVFDITQGRIEMEVNKVNAEDSEIGGVFVATQLSDTDMGSKTPKKVLTKGIFYAKVDQ
Photosystem II reaction center protein T T 31 Chaetoceros Gracilis MEALVYTFLLIGTLMVIFFAVFFRETPRILR
Extrinsic protein in photosystem II U 93 Chaetoceros Gracilis VIDYENIGYLGGSSIVDINNANVRAYLKMPGMYPTVAGKIVSHGPYSGVADLYKIPGLSSAEADVIKKYESRLTAKTPSPDYVIDRINNGLYR
Cytochrome c-550 V 137 Chaetoceros Gracilis IDLDEATRTVVVDNAGNTTVLTPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNISALVDYIKNPTTYDGLESIAEVHPSIKSADIYPRMRSLTDEDLYSIAGHIMLSPKIASEKWGGGKIYY
Photosystem II reaction center protein Ycf12 Y 34 Chaetoceros Gracilis MINWQVIGQLMSTAVIMLAGPAVIVLLALKKGNL
Photosystem II reaction center X protein X 38 Chaetoceros Gracilis MTASLSNFIASLIAGGVVVGVIAIALIVISKSDRILRS
Photosystem II reaction center protein Z Z 61 Chaetoceros Gracilis MITLLVALLVLISLGLVVTVPVALATPGEWEIAKGKFNRFFQIWVFLVIVIAAADGISSSI
Photosystem II chlorophyll protein CP47 B 509 Chaetoceros Gracilis MALPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMTRLGITDSWGGWSITGESVSNPGIWSFEGVALSHIILSGMCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGITGKVQPVAPAWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVETSVSEGLSESQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFRSSPRGWYTYGHANFALLFFFGHLWHGGRTIFRDVFTGIGAEVTEQVEFGAFQKLGDKSTKKQGAV
Extrinsic protein in photosystem II Q 155 Chaetoceros Gracilis AVGESPRFSVFGLVGDGTSYSEGAAYGTDQADKLYSPYSVYSPEGEKSLYKPDNAEYLARKKAVLAETKNRLQKIPAYVDKKEWFNVKDELTRYMYETRGAVRSLSSSVTQKEKAEVFFRALEDTYGAATLKKGDAVKASNDKAIAALDAFTATL
Photosystem II reaction center protein W W 72 Chaetoceros Gracilis MAALAGFMPAILSSTAAVATEGTNEWFGVDDLRLLAVLFLGHWAILSLWLGSYGDSNEDEDFFGEIDYSARK
Unknown protein 0 0 31 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Unknown protein 0 5 31 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Unknown protein 1 1 30 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Unknown protein 1 6 30 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Unknown protein 2 2 10 Chaetoceros Gracilis XXXXXXXXXX
Unknown protein 2 7 10 Chaetoceros Gracilis XXXXXXXXXX
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 11 207 Chaetoceros Gracilis MKLAVAALLVASAAAFAPAPASKASTSLKVSEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGVF
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 12 207 Chaetoceros Gracilis MKLAVAALLVASAAAFAPAPASKASTSLKVSEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGVF
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 13 207 Chaetoceros Gracilis MKLAVAALLVASAAAFAPAPASKASTSLKVSEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGVF
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 14 207 Chaetoceros Gracilis MKLAVAALLVASAAAFAPAPASKASTSLKVSEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGVF
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 15 207 Chaetoceros Gracilis MKLAVAALLVASAAAFAPAPASKASTSLKVSEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGVF
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 16 207 Chaetoceros Gracilis MKLAVAALLVASAAAFAPAPASKASTSLKVSEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGVF
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 17 207 Chaetoceros Gracilis MKLAVAALLVASAAAFAPAPASKASTSLKVSEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGVF
Fucoxanthin chlorophyll a/c-binding protein Lhcf1, FCP1 18 207 Chaetoceros Gracilis MKLAVAALLVASAAAFAPAPASKASTSLKVSEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGVF
Fucoxanthin chlorophyll a/c-binding protein monomer 1 19 215 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Fucoxanthin chlorophyll a/c-binding protein monomer 2 20 143 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Fucoxanthin chlorophyll a/c-binding protein monomer 3 21 155 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Photosystem II chlorophyll protein CP43 C 471 Chaetoceros Gracilis MKTLYSLRRYYHVETPFNSSIAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGLMVFWAGAMVLFEVSHFVPEKPTYEQGFILIQHLATLGYGIGPGGEITSTVPYFAVGVIHLISSAILGFGGIYHSLLGPDTLEESFPFFGYDWRDKNKMTTILGIHLCLLGLGSFLLVIKAMYLGGVYDTWAPGGGDVRYITTPTLNPIVIFGYVFRSPFGGDGWVVSVNNMEDVIGGHIWVGILCITGGIWHIFTKPFAWARRAFVWSGEAYLSYSLAAISLMGFTAALYSWYNNTAYPSELYGPTGPEASQAQAFTFLVRDQRLGANVSSAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDINKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSPRSWLCCSHFFLAFFFLVGHWWHSGRARAAAAGFEKGINRANEPVLSMRPID
Photosystem II reaction center protein D2 D 351 Chaetoceros Gracilis MTIAIGQNQERGLFDLVDDWLKKDRFVFVGWSGLLLFPTAYLAAGGWMTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSVGHSLLLLWGPEAQGDFTRWCQIGGLWTFVALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNHLLDEGIRAWMAAQDQPHENFVFPEEVLPRGNAL
Cytochrome b559 subunit alpha E 84 Chaetoceros Gracilis MSGGSTGERPFSDIITSVRYWIIHSITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKGL
Cytochrome b559 subunit beta F 43 Chaetoceros Gracilis MTNNINQPVAYPIFTFRWLAIHGLAIPTVFFLGGITAMQFIQR
Photosystem II reaction center protein H H 67 Chaetoceros Gracilis MALRTRLGEILRPLNAEYGKVAPGWGTTPIMGIVMLAFLIFLVIILQIYNSSLIIENVDVDWANGIV
Photosystem II reaction center protein I I 38 Chaetoceros Gracilis MLTLKILVYTTVIFFVSLFIFGFLSSDPSRNPNRKDLE
Photosystem II reaction center protein J J 39 Chaetoceros Gracilis MTNTGRIPLWLVGLVGGLAVITMLSLFFYGSYSGLGSSL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2019-01-07
Deposition Author(s): Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.