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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6J0N

Cryo-em structure of an extracellular contractile injection system, baseplate in extended state, refined in c6 symmetry

PDB DOI: 10.2210/pdb6j0n/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77)

Deposited: 2018-12-25
Deposition Author(s): Cai, B. , Cheng, J. , Gao, N. , Huang, Y. , Jiang, F. , Jin, Q. , Li, N. , Wang, X. , Wang, Y. , Yang, J. , Yang, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

6j0n
Literature

Cryo-em structure of an extracellular contractile injection system, baseplate in extended state, refined in c6 symmetry

Cai, B. , Cheng, J. , Gao, N. , Huang, Y. , Jiang, F. , Jin, Q. , Li, N. , Wang, X. , Wang, Y. , Yang, J. , Yang, Y.

Primary Citation of Related Structures: 6J0N


Proteins
Molecule Chains Sequence Length Organism Sequence
Pvc7 D 229 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSLIERGLAKLTINAYKDREGKIRAGTLQAMYNPDSLQLDYQTDYQQSQAINSEKQSSIYVQAKPAGLSLELIFDATMPGNKTPIEEQLMQLKQLCSVDATSNETRFLQVKWGKMRWESRGYFAGRAKSLSVNYTLFDRDATPLRVRVILALVADESLVLQETEQNLQSPAKIALRIQDGVSLALMAASTASTLSGGVDYLTLAWQNGLDNLNGFVPGEILQATRGDES
Pvc7 E 229 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSLIERGLAKLTINAYKDREGKIRAGTLQAMYNPDSLQLDYQTDYQQSQAINSEKQSSIYVQAKPAGLSLELIFDATMPGNKTPIEEQLMQLKQLCSVDATSNETRFLQVKWGKMRWESRGYFAGRAKSLSVNYTLFDRDATPLRVRVILALVADESLVLQETEQNLQSPAKIALRIQDGVSLALMAASTASTLSGGVDYLTLAWQNGLDNLNGFVPGEILQATRGDES
Pvc7 F 229 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSLIERGLAKLTINAYKDREGKIRAGTLQAMYNPDSLQLDYQTDYQQSQAINSEKQSSIYVQAKPAGLSLELIFDATMPGNKTPIEEQLMQLKQLCSVDATSNETRFLQVKWGKMRWESRGYFAGRAKSLSVNYTLFDRDATPLRVRVILALVADESLVLQETEQNLQSPAKIALRIQDGVSLALMAASTASTLSGGVDYLTLAWQNGLDNLNGFVPGEILQATRGDES
Pvc7 G 229 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSLIERGLAKLTINAYKDREGKIRAGTLQAMYNPDSLQLDYQTDYQQSQAINSEKQSSIYVQAKPAGLSLELIFDATMPGNKTPIEEQLMQLKQLCSVDATSNETRFLQVKWGKMRWESRGYFAGRAKSLSVNYTLFDRDATPLRVRVILALVADESLVLQETEQNLQSPAKIALRIQDGVSLALMAASTASTLSGGVDYLTLAWQNGLDNLNGFVPGEILQATRGDES
Pvc2 H 355 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MTTVTSYPGVYIEELNSLALSVSNSATAVPVFAVDEQNQYISEDNAIRINSWMDYLNLIGNFNNEDKLDVSVRAYFANGGGYCYLVKTTSLEKIIPTLDDVTLLVAAGEDIKTTVDVLCQPGKGLFAVFDGPETELTINGAEEAKQAYTATPFAAVYYPWLKADWANIDIPPSAVMAGVYASVDLSRGVWKAPANVALKGGLEPKFLVTDELQGEYNTGRAINMIRNFSNTGTTVWGARTLEDKDNWRYVPVRRLFNSVERDIKRAMSFAMFEPNNQPTWERVRAAISNYLYSLWQQGGLAGSKEEDAYFVQIGKGITMTQEQIDAGQMIVKVGLAAVRPAEFIILQFTQDVEQR
Pvc2 I 355 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MTTVTSYPGVYIEELNSLALSVSNSATAVPVFAVDEQNQYISEDNAIRINSWMDYLNLIGNFNNEDKLDVSVRAYFANGGGYCYLVKTTSLEKIIPTLDDVTLLVAAGEDIKTTVDVLCQPGKGLFAVFDGPETELTINGAEEAKQAYTATPFAAVYYPWLKADWANIDIPPSAVMAGVYASVDLSRGVWKAPANVALKGGLEPKFLVTDELQGEYNTGRAINMIRNFSNTGTTVWGARTLEDKDNWRYVPVRRLFNSVERDIKRAMSFAMFEPNNQPTWERVRAAISNYLYSLWQQGGLAGSKEEDAYFVQIGKGITMTQEQIDAGQMIVKVGLAAVRPAEFIILQFTQDVEQR
Pvc2 J 355 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MTTVTSYPGVYIEELNSLALSVSNSATAVPVFAVDEQNQYISEDNAIRINSWMDYLNLIGNFNNEDKLDVSVRAYFANGGGYCYLVKTTSLEKIIPTLDDVTLLVAAGEDIKTTVDVLCQPGKGLFAVFDGPETELTINGAEEAKQAYTATPFAAVYYPWLKADWANIDIPPSAVMAGVYASVDLSRGVWKAPANVALKGGLEPKFLVTDELQGEYNTGRAINMIRNFSNTGTTVWGARTLEDKDNWRYVPVRRLFNSVERDIKRAMSFAMFEPNNQPTWERVRAAISNYLYSLWQQGGLAGSKEEDAYFVQIGKGITMTQEQIDAGQMIVKVGLAAVRPAEFIILQFTQDVEQR
Pvc2 K 355 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MTTVTSYPGVYIEELNSLALSVSNSATAVPVFAVDEQNQYISEDNAIRINSWMDYLNLIGNFNNEDKLDVSVRAYFANGGGYCYLVKTTSLEKIIPTLDDVTLLVAAGEDIKTTVDVLCQPGKGLFAVFDGPETELTINGAEEAKQAYTATPFAAVYYPWLKADWANIDIPPSAVMAGVYASVDLSRGVWKAPANVALKGGLEPKFLVTDELQGEYNTGRAINMIRNFSNTGTTVWGARTLEDKDNWRYVPVRRLFNSVERDIKRAMSFAMFEPNNQPTWERVRAAISNYLYSLWQQGGLAGSKEEDAYFVQIGKGITMTQEQIDAGQMIVKVGLAAVRPAEFIILQFTQDVEQR
Pvc2 L 355 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MTTVTSYPGVYIEELNSLALSVSNSATAVPVFAVDEQNQYISEDNAIRINSWMDYLNLIGNFNNEDKLDVSVRAYFANGGGYCYLVKTTSLEKIIPTLDDVTLLVAAGEDIKTTVDVLCQPGKGLFAVFDGPETELTINGAEEAKQAYTATPFAAVYYPWLKADWANIDIPPSAVMAGVYASVDLSRGVWKAPANVALKGGLEPKFLVTDELQGEYNTGRAINMIRNFSNTGTTVWGARTLEDKDNWRYVPVRRLFNSVERDIKRAMSFAMFEPNNQPTWERVRAAISNYLYSLWQQGGLAGSKEEDAYFVQIGKGITMTQEQIDAGQMIVKVGLAAVRPAEFIILQFTQDVEQR
Pvc2 M 355 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MTTVTSYPGVYIEELNSLALSVSNSATAVPVFAVDEQNQYISEDNAIRINSWMDYLNLIGNFNNEDKLDVSVRAYFANGGGYCYLVKTTSLEKIIPTLDDVTLLVAAGEDIKTTVDVLCQPGKGLFAVFDGPETELTINGAEEAKQAYTATPFAAVYYPWLKADWANIDIPPSAVMAGVYASVDLSRGVWKAPANVALKGGLEPKFLVTDELQGEYNTGRAINMIRNFSNTGTTVWGARTLEDKDNWRYVPVRRLFNSVERDIKRAMSFAMFEPNNQPTWERVRAAISNYLYSLWQQGGLAGSKEEDAYFVQIGKGITMTQEQIDAGQMIVKVGLAAVRPAEFIILQFTQDVEQR
Pvc5 N 152 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MNDYYTPVVSHRFMASFIFNRIPDPLDIRFQRISGLSRELQVTQYSEGGENARNNYLAEKIQHGTLTLERGVMTVSPLTWMFDRVLSGEKIAYADVVVMLLNENSLPLSSWTLSNALPVRWQTSDFDANSNAILVNTLELRYQDMRWLGVKI
Pvc5 O 152 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MNDYYTPVVSHRFMASFIFNRIPDPLDIRFQRISGLSRELQVTQYSEGGENARNNYLAEKIQHGTLTLERGVMTVSPLTWMFDRVLSGEKIAYADVVVMLLNENSLPLSSWTLSNALPVRWQTSDFDANSNAILVNTLELRYQDMRWLGVKI
Pvc5 P 152 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MNDYYTPVVSHRFMASFIFNRIPDPLDIRFQRISGLSRELQVTQYSEGGENARNNYLAEKIQHGTLTLERGVMTVSPLTWMFDRVLSGEKIAYADVVVMLLNENSLPLSSWTLSNALPVRWQTSDFDANSNAILVNTLELRYQDMRWLGVKI
Pvc5 Q 152 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MNDYYTPVVSHRFMASFIFNRIPDPLDIRFQRISGLSRELQVTQYSEGGENARNNYLAEKIQHGTLTLERGVMTVSPLTWMFDRVLSGEKIAYADVVVMLLNENSLPLSSWTLSNALPVRWQTSDFDANSNAILVNTLELRYQDMRWLGVKI
Pvc5 R 152 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MNDYYTPVVSHRFMASFIFNRIPDPLDIRFQRISGLSRELQVTQYSEGGENARNNYLAEKIQHGTLTLERGVMTVSPLTWMFDRVLSGEKIAYADVVVMLLNENSLPLSSWTLSNALPVRWQTSDFDANSNAILVNTLELRYQDMRWLGVKI
Pvc5 S 152 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MNDYYTPVVSHRFMASFIFNRIPDPLDIRFQRISGLSRELQVTQYSEGGENARNNYLAEKIQHGTLTLERGVMTVSPLTWMFDRVLSGEKIAYADVVVMLLNENSLPLSSWTLSNALPVRWQTSDFDANSNAILVNTLELRYQDMRWLGVKI
Pvc3 T 440 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSAILKAPGVYIEEDASLALSVSNSATAVPVFIGKFTPTVVDSIQVCTRISNWLEFTSSFSLAPTVEIVVQSNTESESESETYHYIETINLSPAVEALRLYFQNGGGACYIYPLNDAEDELVLAAIPEVIEQKGDITLLVCPELDLDYKTKIYGAVSSLLNDNKVGYFLIADSNDGESVSGVWNSAKAAAYYPQLETNLKFSTLPGDKDIRISGYQDDDETHKPKNLDELRTINEALAQDIDARLLEEKQRAVIIPPSAAIAGIYCQTDNRRGVWKAPANVALTGIGSLLDKVDDERQGEMNDKGINVIRSFTDRGFMVWGARTCVDAANISWRYIPVRRLFNSVERDIRQALRAVLFETNSQPTWVRAKAAVDQYLYTLWQKNALMGARPEEAYFVQIGQDITMSEADIKQGKMIMTVGLAAVRPAEFIILQFTQDVVQ
Pvc3 U 440 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSAILKAPGVYIEEDASLALSVSNSATAVPVFIGKFTPTVVDSIQVCTRISNWLEFTSSFSLAPTVEIVVQSNTESESESETYHYIETINLSPAVEALRLYFQNGGGACYIYPLNDAEDELVLAAIPEVIEQKGDITLLVCPELDLDYKTKIYGAVSSLLNDNKVGYFLIADSNDGESVSGVWNSAKAAAYYPQLETNLKFSTLPGDKDIRISGYQDDDETHKPKNLDELRTINEALAQDIDARLLEEKQRAVIIPPSAAIAGIYCQTDNRRGVWKAPANVALTGIGSLLDKVDDERQGEMNDKGINVIRSFTDRGFMVWGARTCVDAANISWRYIPVRRLFNSVERDIRQALRAVLFETNSQPTWVRAKAAVDQYLYTLWQKNALMGARPEEAYFVQIGQDITMSEADIKQGKMIMTVGLAAVRPAEFIILQFTQDVVQ
Pvc3 V 440 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSAILKAPGVYIEEDASLALSVSNSATAVPVFIGKFTPTVVDSIQVCTRISNWLEFTSSFSLAPTVEIVVQSNTESESESETYHYIETINLSPAVEALRLYFQNGGGACYIYPLNDAEDELVLAAIPEVIEQKGDITLLVCPELDLDYKTKIYGAVSSLLNDNKVGYFLIADSNDGESVSGVWNSAKAAAYYPQLETNLKFSTLPGDKDIRISGYQDDDETHKPKNLDELRTINEALAQDIDARLLEEKQRAVIIPPSAAIAGIYCQTDNRRGVWKAPANVALTGIGSLLDKVDDERQGEMNDKGINVIRSFTDRGFMVWGARTCVDAANISWRYIPVRRLFNSVERDIRQALRAVLFETNSQPTWVRAKAAVDQYLYTLWQKNALMGARPEEAYFVQIGQDITMSEADIKQGKMIMTVGLAAVRPAEFIILQFTQDVVQ
Pvc3 W 440 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSAILKAPGVYIEEDASLALSVSNSATAVPVFIGKFTPTVVDSIQVCTRISNWLEFTSSFSLAPTVEIVVQSNTESESESETYHYIETINLSPAVEALRLYFQNGGGACYIYPLNDAEDELVLAAIPEVIEQKGDITLLVCPELDLDYKTKIYGAVSSLLNDNKVGYFLIADSNDGESVSGVWNSAKAAAYYPQLETNLKFSTLPGDKDIRISGYQDDDETHKPKNLDELRTINEALAQDIDARLLEEKQRAVIIPPSAAIAGIYCQTDNRRGVWKAPANVALTGIGSLLDKVDDERQGEMNDKGINVIRSFTDRGFMVWGARTCVDAANISWRYIPVRRLFNSVERDIRQALRAVLFETNSQPTWVRAKAAVDQYLYTLWQKNALMGARPEEAYFVQIGQDITMSEADIKQGKMIMTVGLAAVRPAEFIILQFTQDVVQ
Pvc3 X 440 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSAILKAPGVYIEEDASLALSVSNSATAVPVFIGKFTPTVVDSIQVCTRISNWLEFTSSFSLAPTVEIVVQSNTESESESETYHYIETINLSPAVEALRLYFQNGGGACYIYPLNDAEDELVLAAIPEVIEQKGDITLLVCPELDLDYKTKIYGAVSSLLNDNKVGYFLIADSNDGESVSGVWNSAKAAAYYPQLETNLKFSTLPGDKDIRISGYQDDDETHKPKNLDELRTINEALAQDIDARLLEEKQRAVIIPPSAAIAGIYCQTDNRRGVWKAPANVALTGIGSLLDKVDDERQGEMNDKGINVIRSFTDRGFMVWGARTCVDAANISWRYIPVRRLFNSVERDIRQALRAVLFETNSQPTWVRAKAAVDQYLYTLWQKNALMGARPEEAYFVQIGQDITMSEADIKQGKMIMTVGLAAVRPAEFIILQFTQDVVQ
Pvc3 Y 440 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSAILKAPGVYIEEDASLALSVSNSATAVPVFIGKFTPTVVDSIQVCTRISNWLEFTSSFSLAPTVEIVVQSNTESESESETYHYIETINLSPAVEALRLYFQNGGGACYIYPLNDAEDELVLAAIPEVIEQKGDITLLVCPELDLDYKTKIYGAVSSLLNDNKVGYFLIADSNDGESVSGVWNSAKAAAYYPQLETNLKFSTLPGDKDIRISGYQDDDETHKPKNLDELRTINEALAQDIDARLLEEKQRAVIIPPSAAIAGIYCQTDNRRGVWKAPANVALTGIGSLLDKVDDERQGEMNDKGINVIRSFTDRGFMVWGARTCVDAANISWRYIPVRRLFNSVERDIRQALRAVLFETNSQPTWVRAKAAVDQYLYTLWQKNALMGARPEEAYFVQIGQDITMSEADIKQGKMIMTVGLAAVRPAEFIILQFTQDVVQ
Pvc1 Z 149 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSTSTSQIAVEYPIPVYRFIVSVGDEKIPFNSVSGLDISYDTIEYRDGVGNWFKMPGQSQSTNITLRKGVFPGKTELFDWINSIQLNQVEKKDITISLTNDAGTELLMTWNVSNAFPTSLTSPSFDATSNDIAVQEITLMADRVIMQAV
Pvc4 A 410 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MERLQPGVTLTESIITMGQQEIPSAVPVFIGYTVRYPEQSEASVRIDSLAEYTSLFGDDHVMMFAVRHYFDNGGQQAFVLPLKDNMPSVEMTTAEAENLIAALRSATVSEAIGGHSQITLILVPDMARLNDSDIDDSSTQVSLWSQGWEALLQLSQVRPNLFVLLDAPDNVEQAQKCMTTLSSDYRQWGAAYWPRLETTYQKEISGKDNESQGIFQGTVLSPTAAVAAVIQRTDNDAGVWKAPANIALSQVIRPVKSYLQGSVLFNSSGTSLNVIRSFPGKGIRVWGCRTLENTDNTQWRYLQTRRLVSYVTAHLTQLARMYVFEPNNELTWMKLKGQSYNWLRQLWLQGGLYGSQEDEAFNILLGVNETMTEDDVRAGKMIMKVELAVLFPAEFIEISLVFNTQTEALS
Pvc7 B 229 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSLIERGLAKLTINAYKDREGKIRAGTLQAMYNPDSLQLDYQTDYQQSQAINSEKQSSIYVQAKPAGLSLELIFDATMPGNKTPIEEQLMQLKQLCSVDATSNETRFLQVKWGKMRWESRGYFAGRAKSLSVNYTLFDRDATPLRVRVILALVADESLVLQETEQNLQSPAKIALRIQDGVSLALMAASTASTLSGGVDYLTLAWQNGLDNLNGFVPGEILQATRGDES
Pvc7 C 229 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSLIERGLAKLTINAYKDREGKIRAGTLQAMYNPDSLQLDYQTDYQQSQAINSEKQSSIYVQAKPAGLSLELIFDATMPGNKTPIEEQLMQLKQLCSVDATSNETRFLQVKWGKMRWESRGYFAGRAKSLSVNYTLFDRDATPLRVRVILALVADESLVLQETEQNLQSPAKIALRIQDGVSLALMAASTASTLSGGVDYLTLAWQNGLDNLNGFVPGEILQATRGDES
Pvc1 1 149 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSTSTSQIAVEYPIPVYRFIVSVGDEKIPFNSVSGLDISYDTIEYRDGVGNWFKMPGQSQSTNITLRKGVFPGKTELFDWINSIQLNQVEKKDITISLTNDAGTELLMTWNVSNAFPTSLTSPSFDATSNDIAVQEITLMADRVIMQAV
Pvc1 2 149 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSTSTSQIAVEYPIPVYRFIVSVGDEKIPFNSVSGLDISYDTIEYRDGVGNWFKMPGQSQSTNITLRKGVFPGKTELFDWINSIQLNQVEKKDITISLTNDAGTELLMTWNVSNAFPTSLTSPSFDATSNDIAVQEITLMADRVIMQAV
Pvc1 3 149 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSTSTSQIAVEYPIPVYRFIVSVGDEKIPFNSVSGLDISYDTIEYRDGVGNWFKMPGQSQSTNITLRKGVFPGKTELFDWINSIQLNQVEKKDITISLTNDAGTELLMTWNVSNAFPTSLTSPSFDATSNDIAVQEITLMADRVIMQAV
Pvc1 4 149 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSTSTSQIAVEYPIPVYRFIVSVGDEKIPFNSVSGLDISYDTIEYRDGVGNWFKMPGQSQSTNITLRKGVFPGKTELFDWINSIQLNQVEKKDITISLTNDAGTELLMTWNVSNAFPTSLTSPSFDATSNDIAVQEITLMADRVIMQAV
Pvc1 5 149 Photorhabdus Asymbiotica Subsp. Asymbiotica (Strain Atcc 43949 / 3105-77) MSTSTSQIAVEYPIPVYRFIVSVGDEKIPFNSVSGLDISYDTIEYRDGVGNWFKMPGQSQSTNITLRKGVFPGKTELFDWINSIQLNQVEKKDITISLTNDAGTELLMTWNVSNAFPTSLTSPSFDATSNDIAVQEITLMADRVIMQAV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-12-25
Deposition Author(s): Cai, B. , Cheng, J. , Gao, N. , Huang, Y. , Jiang, F. , Jin, Q. , Li, N. , Wang, X. , Wang, Y. , Yang, J. , Yang, Y.