6IY3
Structure of snf2-mmtv-a nucleosome complex at shl-2 in adp state
PDB DOI: 10.2210/pdb6iy3/pdb
Classification: STRUCTURAL PROTEIN/HYDROLASE/DNA
Organism(s): Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct
Deposited: 2018-12-12
Deposition Author(s): Chen, Z. , Li, M. , Li, X. , Liu, X. , Xia, X.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY
Resolution: 3.67 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H3 | A | 100 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct | KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3 | E | 100 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct | KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 88 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct | AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 88 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct | AKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A | C | 113 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct | KTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTE |
| Histone H2A | G | 113 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct | KTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTE |
| Histone H2B | D | 98 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct | KRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B | H | 98 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct | KRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Transcription regulatory protein SNF2 | O | 679 | Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Xenopus Laevis , Synthetic Construct | LLDQTKDTRITHLLRQTNAFLDSLTRAVKDQQKYTKEMIDSHIKEASEEVDDLSMVPKMKDEEYDDDDDNSNVDYYNVAHRIKEDIKKQPSILVGGTLKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLSTLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVGLRGFNNQIMQLKKICNHPFVFEEVEDQINPTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTNSVEEVILERAYKKLDIDGKVIQAGKFDNKSTSEEQEALLRSLLDAEEERRKKRESGVEEEEELKDSEINEILARNDEEMAVLTRMDEDRSKKEEELGVKSRLLEKSELPDIYSRDIGAELKREESESAAVYNG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (147-MER) | j | 147 | NA | ATCTGCAACAGTCCTAACATTCACCTCTTGTGTGTTTGTGTCTGTTCGCCATCCCGTCTCCGCTCGTCACTTATCCTTCACTTTCCAGAGGGTCCCCCCGCAGACCCCGGCGACCCTCAGGTCGGCCGACTGCGGCACAGTTTTGAT |
| DNA (147-MER) | i | 147 | NA | ATCAAAACTGTGCCGCAGTCGGCCGACCTGAGGGTCGCCGGGGTCTGCGGGGGGACCCTCTGGAAAGTGAAGGATAAGTGACGAGCGGAGACGGGATGGCGAACAGACACAAACACACAAGAGGTGAATGTTAGGACTGTTGCAGAT |
Experimental Data
Method: ELECTRON MICROSCOPY