6ITC
Structure of a substrate engaged seca-secy protein translocation machine
PDB DOI: 10.2210/pdb6itc/pdb
Classification: PROTEIN TRANSPORT Organism(s): Aequorea Victoria , Bacillus Subtilis (Strain 168) , Escherichia Coli , Geobacillus Thermodenitrificans (Strain Ng80-2) , Lama Glama
Deposited: 2018-11-21 Deposition Author(s): Gao, N. , Long, L. , Ma, C.Y. , Park, E.Y. , Rapoport, T.A. , Sun, D.J. , Wu, X.F.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.45 Å
Structure of a substrate engaged seca-secy protein translocation machine
Gao, N. , Long, L. , Ma, C.Y. , Park, E.Y. , Rapoport, T.A. , Sun, D.J. , Wu, X.F.
Primary Citation of Related Structures: 6ITC
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Protein translocase subunit SecA | A | 780 | Aequorea Victoria , Bacillus Subtilis (Strain 168) , Escherichia Coli , Geobacillus Thermodenitrificans (Strain Ng80-2) , Lama Glama | MLGILNKMFDPTKRTLNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDDLLVEAFAVVREASRRVTGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAMLDRFGMDDSTPIQSKMVSRAVESSQKRVEGNNFDSRKQLLQYDDVLRQQREVIYKQRFEVIDSENLREIVENMIKSSLERAIAAYTPREELPEEWKLDGLVDLINTTYLDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQFGKEQMREFEKVIVLRAVDSKWMDHIDAMDQLRQGIHLRAYAQTNPLREYQMEGFAMFEHMIESIEDEVAKFVMKAEI |
| Protein translocase subunit SecY | Y | 424 | Aequorea Victoria , Bacillus Subtilis (Strain 168) , Escherichia Coli , Geobacillus Thermodenitrificans (Strain Ng80-2) , Lama Glama | MFRTISNFMRVSDIRNKIIFTLLMLIVFRIGTFIPVPSVNTDVLKLQDQLNAFGVLNIFCGGALQNFSIFAMGVMPYITASIIVQLLQMDVVPKFAEWSKQGEMGRRKLAQFTRYFTIVLGFIQALGMSYGFNNLAGGMLIQNPGIGTYLLIAVVLTAGTAFLMWLGEQITAKGVGNGISIIIFAGIVSGIPTILNQIYAQTFGGLNIVRLLLVALAVVAVIVGVIYIQQAFRKIPIQYAKRLEGRNPVGGHSTHLPLKVNPAGVIPVIFAVSFLIAPPTIASFFGTNDVTLWIRRTFDYTHPVGMTIYVVLIIAFTYFYAFVQVNPEQMADNLKKQGGYIPGIRPGKNTQEYVTRILYRLTLVGSLFLAFIAVLPVFFVNFANLPPSAQIGGTSLLIVVGVALETMKQLESQLVKRHYRGFIK |
| Protein translocase subunit SecE | E | 70 | Aequorea Victoria , Bacillus Subtilis (Strain 168) , Escherichia Coli , Geobacillus Thermodenitrificans (Strain Ng80-2) , Lama Glama | MQRVTNFFKEVVRELKKVSWPNRKELVNYTAVVLATVAFFTVFFAVIDLGISQLIRLVFEGGHHHHHHHH |
| Nanobody | V | 116 | Aequorea Victoria , Bacillus Subtilis (Strain 168) , Escherichia Coli , Geobacillus Thermodenitrificans (Strain Ng80-2) , Lama Glama | QVQLVETGGGLVQPGGSLRLSCGASGSIFNMYAMGWYRQAPGKRREVVARIATDDSTMYPDSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCYYQRTVMSQPYWGQGTQVTVS |
| Translocating peptide | B | 59 | Aequorea Victoria , Bacillus Subtilis (Strain 168) , Escherichia Coli , Geobacillus Thermodenitrificans (Strain Ng80-2) , Lama Glama | MAKKTAIAIAVALAGFATVASYAQYEDGCSGELERQHTFAGGARSISGDGDSPHSYHSG |
| Green fluorescent protein | G | 238 | Aequorea Victoria , Bacillus Subtilis (Strain 168) , Escherichia Coli , Geobacillus Thermodenitrificans (Strain Ng80-2) , Lama Glama | MSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTFSYGVQCFSRYPDHMKRHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYITADKQKNGIKANFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLLEFVTAAGITHGMDELYK |
| Nanobody | C | 112 | Aequorea Victoria , Bacillus Subtilis (Strain 168) , Escherichia Coli , Geobacillus Thermodenitrificans (Strain Ng80-2) , Lama Glama | VALVESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQAPGKEREWVAGMSAGDRSSYEDSVKGRFTISRDDARNTVYLQMNSLKPEDTAVYYCNVNVGFEYWGQGTQVTVS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-11-21 Deposition Author(s): Gao, N. , Long, L. , Ma, C.Y. , Park, E.Y. , Rapoport, T.A. , Sun, D.J. , Wu, X.F.