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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6IKM

Crystal structure of spue-spermidine in complex with scfv5

PDB DOI: 10.2210/pdb6ikm/pdb

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Salmonella Enterica , Vibrio Nigripulchritudo

Deposited: 2018-10-16
Deposition Author(s): Sun, X. , Wu, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.398 Å

6ikm
Literature

Crystal structure of spue-spermidine in complex with scfv5

Sun, X. , Wu, D.

Primary Citation of Related Structures: 6IKM


Proteins
Molecule Chains Sequence Length Organism Sequence
ScFv5 A 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 B 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 C 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 D 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 E 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 F 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 G 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 H 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 I 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 J 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 K 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 L 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 M 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 N 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 O 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 P 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 Q 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
ScFv5 R 258 Salmonella Enterica , Vibrio Nigripulchritudo MAQVQLVETGDEVKTPGASVKVSCKVSGYTFTSYGISWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARDKRYMDVWGKGTTVTVSSGGGGSGGGGSGGGGSQSVLTQPPSVSGAPGQKVTISCSGSSSNIGRNYVSWYQQLPGAAPKLLLYDNNKRPSGIPDRFSASKSGPSTTLAITGLQTGDEADYFCGVWDSSLRAVLFGGGTKLTVLGGLGGLVDYKDDDDK
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2018-10-16
Deposition Author(s): Sun, X. , Wu, D.