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FASTA Sequence PDB Format mmCIF Format
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6IDK

Cryo-em structure of immature dengue virus serotype 3 in complex with human antibody 1h10 fab at ph 5.0 (class i particle)

PDB DOI: 10.2210/pdb6idk/pdb

Classification: VIRUS
Organism(s): Dengue Virus 3 , Homo Sapiens

Deposited: 2018-09-10
Deposition Author(s): Fibriansah, G. , Kostyuchenko, V.A. , Lok, S.M. , Ng, T.S. , Shi, J. , Wirawan, M. , Zhang, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 25.0 Å

6idk
Literature

Cryo-em structure of immature dengue virus serotype 3 in complex with human antibody 1h10 fab at ph 5.0 (class i particle)

Fibriansah, G. , Kostyuchenko, V.A. , Lok, S.M. , Ng, T.S. , Shi, J. , Wirawan, M. , Zhang, Q.

Primary Citation of Related Structures: 6IDK


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope protein A 493 Dengue Virus 3 , Homo Sapiens MRCVGVGNRDFVEGLSGATWVDVVLEHGGCVTTMAKNKPTLDIELQKTEATQLATLRKLCIEGKITNITTDSRCPTQGEAVLPEEQDQNYVCKHTYVDRGWGNGCGLFGKGSLVTCAKFQCLEPIEGKVVQYENLKYTVIITVHTGDQHQVGNETQGVTAEITPQASTTEAILPEYGTLGLECSPRTGLDFNEMILLTMKNKAWMVHRQWFFDLPLPWASGATTETPTWNRKELLVTFKNAHAKKQEVVVLGSQEGAMHTALTGATEIQNSGGTSIFAGHLKCRLKMDKLELKGMSYAMCTNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPVNIEAEPPFGESNIVIGIGDNALKINWYKKGSSIGKMFEATARGARRMAILGDTAWDFGSVGGVLNSLGKMVHQIFGSAYTALFSGVSWVMKIGIGVLLTWIGLNSKNTSMSFSCIAIGIITLYLGAVVQA
Envelope protein B 493 Dengue Virus 3 , Homo Sapiens MRCVGVGNRDFVEGLSGATWVDVVLEHGGCVTTMAKNKPTLDIELQKTEATQLATLRKLCIEGKITNITTDSRCPTQGEAVLPEEQDQNYVCKHTYVDRGWGNGCGLFGKGSLVTCAKFQCLEPIEGKVVQYENLKYTVIITVHTGDQHQVGNETQGVTAEITPQASTTEAILPEYGTLGLECSPRTGLDFNEMILLTMKNKAWMVHRQWFFDLPLPWASGATTETPTWNRKELLVTFKNAHAKKQEVVVLGSQEGAMHTALTGATEIQNSGGTSIFAGHLKCRLKMDKLELKGMSYAMCTNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPVNIEAEPPFGESNIVIGIGDNALKINWYKKGSSIGKMFEATARGARRMAILGDTAWDFGSVGGVLNSLGKMVHQIFGSAYTALFSGVSWVMKIGIGVLLTWIGLNSKNTSMSFSCIAIGIITLYLGAVVQA
Envelope protein C 493 Dengue Virus 3 , Homo Sapiens MRCVGVGNRDFVEGLSGATWVDVVLEHGGCVTTMAKNKPTLDIELQKTEATQLATLRKLCIEGKITNITTDSRCPTQGEAVLPEEQDQNYVCKHTYVDRGWGNGCGLFGKGSLVTCAKFQCLEPIEGKVVQYENLKYTVIITVHTGDQHQVGNETQGVTAEITPQASTTEAILPEYGTLGLECSPRTGLDFNEMILLTMKNKAWMVHRQWFFDLPLPWASGATTETPTWNRKELLVTFKNAHAKKQEVVVLGSQEGAMHTALTGATEIQNSGGTSIFAGHLKCRLKMDKLELKGMSYAMCTNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTEDGQGKAHNGRLITANPVVTKKEEPVNIEAEPPFGESNIVIGIGDNALKINWYKKGSSIGKMFEATARGARRMAILGDTAWDFGSVGGVLNSLGKMVHQIFGSAYTALFSGVSWVMKIGIGVLLTWIGLNSKNTSMSFSCIAIGIITLYLGAVVQA
Premembrane protein D 166 Dengue Virus 3 , Homo Sapiens FHLTSRDGEPRMIVGKNERGKSLLFKTASGINMCTLIAMDLGEMCDDTVTYKCPHITEVEPEDIDCWCNLTSTWVTYGTCNQAGEHRRDKRSVALAPHVGMGLDTRTQTWMSAEGAWRQVEKVETWALRHPGFTILALFLAHYIGTSLTQKVVIFILLMLVTPSMT
Premembrane protein E 166 Dengue Virus 3 , Homo Sapiens FHLTSRDGEPRMIVGKNERGKSLLFKTASGINMCTLIAMDLGEMCDDTVTYKCPHITEVEPEDIDCWCNLTSTWVTYGTCNQAGEHRRDKRSVALAPHVGMGLDTRTQTWMSAEGAWRQVEKVETWALRHPGFTILALFLAHYIGTSLTQKVVIFILLMLVTPSMT
Premembrane protein F 166 Dengue Virus 3 , Homo Sapiens FHLTSRDGEPRMIVGKNERGKSLLFKTASGINMCTLIAMDLGEMCDDTVTYKCPHITEVEPEDIDCWCNLTSTWVTYGTCNQAGEHRRDKRSVALAPHVGMGLDTRTQTWMSAEGAWRQVEKVETWALRHPGFTILALFLAHYIGTSLTQKVVIFILLMLVTPSMT
Fab 1H10 heavy chain (V-region) H 137 Dengue Virus 3 , Homo Sapiens QVQLVESGGGVVQPGRSLRLSCAASGFTFSNFAMHWVRQAPGKGLEWVSLISYDGSNKYNADSVRGRFSISRDNSKNTLYLQMNSLRLEDTAVYYCVRVRQPWTQAWSTNYFYYYGMDVWGQGTTVTVSSASTKGPS
Fab 1H10 heavy chain (V-region) I 137 Dengue Virus 3 , Homo Sapiens QVQLVESGGGVVQPGRSLRLSCAASGFTFSNFAMHWVRQAPGKGLEWVSLISYDGSNKYNADSVRGRFSISRDNSKNTLYLQMNSLRLEDTAVYYCVRVRQPWTQAWSTNYFYYYGMDVWGQGTTVTVSSASTKGPS
Fab 1H10 heavy chain (V-region) M 137 Dengue Virus 3 , Homo Sapiens QVQLVESGGGVVQPGRSLRLSCAASGFTFSNFAMHWVRQAPGKGLEWVSLISYDGSNKYNADSVRGRFSISRDNSKNTLYLQMNSLRLEDTAVYYCVRVRQPWTQAWSTNYFYYYGMDVWGQGTTVTVSSASTKGPS
Fab 1H10 light chain (V-region) J 116 Dengue Virus 3 , Homo Sapiens QSVLTQPPSASGTPGQRVTISCSGGSSNIGSSYVYWYKQVPGTAPKLLIYRNNERPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLRGQVFGGGTKLTVLGQPKAA
Fab 1H10 light chain (V-region) L 116 Dengue Virus 3 , Homo Sapiens QSVLTQPPSASGTPGQRVTISCSGGSSNIGSSYVYWYKQVPGTAPKLLIYRNNERPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLRGQVFGGGTKLTVLGQPKAA
Fab 1H10 light chain (V-region) N 116 Dengue Virus 3 , Homo Sapiens QSVLTQPPSASGTPGQRVTISCSGGSSNIGSSYVYWYKQVPGTAPKLLIYRNNERPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYCAAWDDSLRGQVFGGGTKLTVLGQPKAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-09-10
Deposition Author(s): Fibriansah, G. , Kostyuchenko, V.A. , Lok, S.M. , Ng, T.S. , Shi, J. , Wirawan, M. , Zhang, Q.