PDBi (Protein Data Bank in India)

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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6I1Y

Vibrio vulnificus epsd

PDB DOI: 10.2210/pdb6i1y/pdb

Classification: PROTEIN TRANSPORT
Organism(s): Vibrio Vulnificus

Deposited: 2018-10-30
Deposition Author(s): Contreras-Martel, C. , Farias Estrozi, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

6i1y
Literature

Vibrio vulnificus epsd

Contreras-Martel, C. , Farias Estrozi, L.

Primary Citation of Related Structures: 6I1Y


Proteins
Molecule Chains Sequence Length Organism Sequence
General secretion pathway protein GspD A 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD B 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD C 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD D 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD E 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD F 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD G 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD H 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD I 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD J 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD K 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD L 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD M 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD N 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
General secretion pathway protein GspD O 553 Vibrio Vulnificus DNVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIKRVDQAGNREIEVVELGNASAAEMVRIVDALNRTTDAKNTPEFLQPKLVADERTNSILISGDPKVRDRLKRLIRQLDVEMASKGNNRVVYLKYAKAEDLVDVLKGVSDNLQAEKNSGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQEVITQLDIRRAQVLIEALIVEMAEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDKTVTDSRWNSDTDKYEPYSRTEAGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTNTQVEKKNLMVFIKPTIIRDGMTADGITQRKYNYIRAEQLYKAEQGLKLMDDGHIPVLPKFGEDKRHPAEIQAFIDQMEQQ
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-10-30
Deposition Author(s): Contreras-Martel, C. , Farias Estrozi, L.