6HWH
Structure of a functional obligate respiratory supercomplex from mycobacterium smegmatis
PDB DOI: 10.2210/pdb6hwh/pdb
Classification: ELECTRON TRANSPORT Organism(s): Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155
Deposited: 2018-10-12 Deposition Author(s): Adelroth, P. , Benlekbir, S. , Brzezinski, P. , Fedotovskaya, O. , Guo, H. , Hogbom, M. , Kuang, Q. , Nitharwal, R.G. , Rubinstein, J.L. , Schafer, J. , Sjostrand, D. , Wiseman, B.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Structure of a functional obligate respiratory supercomplex from mycobacterium smegmatis
Adelroth, P. , Benlekbir, S. , Brzezinski, P. , Fedotovskaya, O. , Guo, H. , Hogbom, M. , Kuang, Q. , Nitharwal, R.G. , Rubinstein, J.L. , Schafer, J. , Sjostrand, D. , Wiseman, B.
Primary Citation of Related Structures: 6HWH
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ubiquinol-cytochrome c reductase iron-sulfur subunit | A | 408 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MDRIASMSQDSPDIKGTDAPGQTGVPGQPTDAELAEMSREELVKLGGKIDGVETIFKEPRWPVPGTKAEKRTERLVAYWLMLGGLSGLALLLVFLFWPWEYQPFGSEGEFLYSLATPLYGLTFGLSILSIGIGAVLFQKKFIPEEISVQDRHDGRSPEVHRKTVAANLTDALEGSTLKRRKVIGLSLGIGLGAFGAGTLVAFIGGLIKNPWKPVVPTAEGKKAVLWTSGWTPRFKGETIYLARATGRPGESPFVKMRPEDIDAGGMETVFPWRESDGDGTTVESEHKLTEIAMGVRNPVMLIRIKPADMHRVIKRKGQESFNFGELFAYTKVCSHLGCPSSLYEQQTYRILCPCHQSQFDALEFAKPIFGPAARALAQLPITIDEDGYLVANGDFVEPVGPAFWERKS |
| Ubiquinol-cytochrome C reductase QcrB | B | 554 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MSPDFAKLAAAQGDAIDSRYHPSAAVRRQLNKVFPTHWSFLLGEIALYSFIILLLTGVWLTLFFDPSMAHVTYDGVYQPLRGVQMSRAYETALDISFEVRGGLFVRQVHHWAALMFAASIMVHLARIFFTGAFRRPREANWVIGSLLLILAMFEGFFGYSLPDDLLSGTGIRAALSGITMGIPVIGTWMHWALFGGDFPGEILIPRLYALHILLIPGIILALIGAHLALVWFQKHTQFPGPGRTETNVVGVRVMPVFAVKSGAFFAMITGVLGLMGGLLTINPIWNLGPYKPSQVSAGSQPDFYMMWTDGLIRLWPAWEFYPFGHTIPQGVWVAVGMGLVFALLIAYPFIEKKVTGDDAHHNLLQRPRDVPVRTAIGSMAIALYLLLTFACMNDIIALKFHISLNATTWIGRIGMVVLPAIVYFVAYRWAISLQRSDREVLEHGVETGIIKRLPHGAYVELHQPLGPVDEHGHPIPLEYAGAPLPKRMNKLGSGGAPGTGSFLFPDPAVEHEALTEAAHASEHKSLTALKEHQDRIHGNGETNGHHDYKDDDDK |
| Cytochrome c oxidase subunit 1 | V | 583 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTTHAPSAGELLARRPFPQRLGPRWTLLYKLVTTTDHKLIGMMYVVACFIFFFIGGLMALLLRTELAVPGLQFLSNEQYNQLFTMHGTVMLLFYATPIVFGFANLVVPLQIGAPDVAFPRLNALSFWLFLFGASIALGGFLAPGGPADFGWTAYTPLSNAMHSPGAGGDLWIFGLIVGGLGTILGAVNMITTVVCMRAPGMIMFRMPIFTWNILVTSVIVLVAFPLLTSALFGLAADRNLGAHVFDPANGGTMLWEHLFWFFGHPEVYIIALPFFGIVTEIFPVFSRKPVFGYTTLVYATISIGALSIAVWAHHLYATGAVLLPFFSFMTFMIAVPTGIKFVNWIGTMWKGQLTFETPMLFSVGFLVTFLLGGLTGVILASPPLDFHVTDSYFVVAHFHYVLFGTIVFATYAGVYFWFPKMTGRLLDDRLGKLHFWLTLIGFHTTFLVHHWLGAEGMPRRYADYLPTDGFTTLNIVSTIGSFILGVSMLPFVWNVFKSWRYGEPVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHMIERLRAESHPGRTQGGPGAVTLPQPQARSHPVE |
| Cytochrome c oxidase subunit 1 | Q | 583 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTTHAPSAGELLARRPFPQRLGPRWTLLYKLVTTTDHKLIGMMYVVACFIFFFIGGLMALLLRTELAVPGLQFLSNEQYNQLFTMHGTVMLLFYATPIVFGFANLVVPLQIGAPDVAFPRLNALSFWLFLFGASIALGGFLAPGGPADFGWTAYTPLSNAMHSPGAGGDLWIFGLIVGGLGTILGAVNMITTVVCMRAPGMIMFRMPIFTWNILVTSVIVLVAFPLLTSALFGLAADRNLGAHVFDPANGGTMLWEHLFWFFGHPEVYIIALPFFGIVTEIFPVFSRKPVFGYTTLVYATISIGALSIAVWAHHLYATGAVLLPFFSFMTFMIAVPTGIKFVNWIGTMWKGQLTFETPMLFSVGFLVTFLLGGLTGVILASPPLDFHVTDSYFVVAHFHYVLFGTIVFATYAGVYFWFPKMTGRLLDDRLGKLHFWLTLIGFHTTFLVHHWLGAEGMPRRYADYLPTDGFTTLNIVSTIGSFILGVSMLPFVWNVFKSWRYGEPVTVDDPWGYGNSLEWATSCPPPRHNFTELPRIRSERPAFELHYPHMIERLRAESHPGRTQGGPGAVTLPQPQARSHPVE |
| Cytochrome c oxidase polypeptide 4 | X | 139 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MHIEARLFEILTAFFALAAVVYAVLTAMFATGGVEWAGTTALVLTTGLTLITGTFFRFVARRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAFVITSVCGLVFEYYWGPEKH |
| Cytochrome c oxidase polypeptide 4 | S | 139 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MHIEARLFEILTAFFALAAVVYAVLTAMFATGGVEWAGTTALVLTTGLTLITGTFFRFVARRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAFVITSVCGLVFEYYWGPEKH |
| Cytochrome c oxidase subunit 3 | Z | 203 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQAGGAWPPEPTELNLALAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVITFLMGLFFVLGQGYEYIHLVEHGTTIPGSAYGSVFYLATGFHGLHVIGGLVAFVLLLARTKMSKFTPAQATAAIVVSYYWHFVDIVWIALFATIYFVR |
| Cytochrome c oxidase subunit 3 | W | 203 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQAGGAWPPEPTELNLALAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVITFLMGLFFVLGQGYEYIHLVEHGTTIPGSAYGSVFYLATGFHGLHVIGGLVAFVLLLARTKMSKFTPAQATAAIVVSYYWHFVDIVWIALFATIYFVR |
| Ubiquinol-cytochrome C reductase QcrB | Y | 554 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MSPDFAKLAAAQGDAIDSRYHPSAAVRRQLNKVFPTHWSFLLGEIALYSFIILLLTGVWLTLFFDPSMAHVTYDGVYQPLRGVQMSRAYETALDISFEVRGGLFVRQVHHWAALMFAASIMVHLARIFFTGAFRRPREANWVIGSLLLILAMFEGFFGYSLPDDLLSGTGIRAALSGITMGIPVIGTWMHWALFGGDFPGEILIPRLYALHILLIPGIILALIGAHLALVWFQKHTQFPGPGRTETNVVGVRVMPVFAVKSGAFFAMITGVLGLMGGLLTINPIWNLGPYKPSQVSAGSQPDFYMMWTDGLIRLWPAWEFYPFGHTIPQGVWVAVGMGLVFALLIAYPFIEKKVTGDDAHHNLLQRPRDVPVRTAIGSMAIALYLLLTFACMNDIIALKFHISLNATTWIGRIGMVVLPAIVYFVAYRWAISLQRSDREVLEHGVETGIIKRLPHGAYVELHQPLGPVDEHGHPIPLEYAGAPLPKRMNKLGSGGAPGTGSFLFPDPAVEHEALTEAAHASEHKSLTALKEHQDRIHGNGETNGHHDYKDDDDK |
| Co-purified unknown transmembrane helices built as polyALA | G | 74 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Co-purified unknown transmembrane helices built as polyALA | C | 74 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Co-purified unknown transmembrane helices built as polyALA | H | 65 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Co-purified unknown transmembrane helices built as polyALA | D | 65 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Cytochrome bc1 complex cytochrome c subunit | I | 268 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTSKSRRRLRRRLSAGLLLLIGLAVAGGVAATLTPQPQVAVADESQSALLRTGKQLFETSCVSCHGANLQGVPDRGPSLIGTGEAAVYFQVSTGRMPAMRGEAQAPSKPPHFDESQIDALGAYVQANGGGPTVPRDDHGAVAQESLIGGDVARGGDLFRLNCASCHNFTGKGGALSSGKYAPDLGDANPAQIYTAMLTGPQNMPKFSDRQLTPDEKRDIVAYVRESAETPSYGGYGLGGFGPAPEGMAMWIIGMVAAIGVAMWIGSRA |
| Co-purified unknown peptide built as polyALA | E | 20 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | XXXXXXXXXXXXXXXXXXXX |
| Cytochrome bc1 complex cytochrome c subunit | J | 268 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTSKSRRRLRRRLSAGLLLLIGLAVAGGVAATLTPQPQVAVADESQSALLRTGKQLFETSCVSCHGANLQGVPDRGPSLIGTGEAAVYFQVSTGRMPAMRGEAQAPSKPPHFDESQIDALGAYVQANGGGPTVPRDDHGAVAQESLIGGDVARGGDLFRLNCASCHNFTGKGGALSSGKYAPDLGDANPAQIYTAMLTGPQNMPKFSDRQLTPDEKRDIVAYVRESAETPSYGGYGLGGFGPAPEGMAMWIIGMVAAIGVAMWIGSRA |
| Co-purified unknown peptide built as polyALA | F | 35 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Cytochrome bc1 complex cytochrome c subunit | M | 268 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTSKSRRRLRRRLSAGLLLLIGLAVAGGVAATLTPQPQVAVADESQSALLRTGKQLFETSCVSCHGANLQGVPDRGPSLIGTGEAAVYFQVSTGRMPAMRGEAQAPSKPPHFDESQIDALGAYVQANGGGPTVPRDDHGAVAQESLIGGDVARGGDLFRLNCASCHNFTGKGGALSSGKYAPDLGDANPAQIYTAMLTGPQNMPKFSDRQLTPDEKRDIVAYVRESAETPSYGGYGLGGFGPAPEGMAMWIIGMVAAIGVAMWIGSRA |
| Cytochrome bc1 complex cytochrome c subunit | K | 268 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTSKSRRRLRRRLSAGLLLLIGLAVAGGVAATLTPQPQVAVADESQSALLRTGKQLFETSCVSCHGANLQGVPDRGPSLIGTGEAAVYFQVSTGRMPAMRGEAQAPSKPPHFDESQIDALGAYVQANGGGPTVPRDDHGAVAQESLIGGDVARGGDLFRLNCASCHNFTGKGGALSSGKYAPDLGDANPAQIYTAMLTGPQNMPKFSDRQLTPDEKRDIVAYVRESAETPSYGGYGLGGFGPAPEGMAMWIIGMVAAIGVAMWIGSRA |
| Cytochrome c oxidase subunit 2 | P | 341 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTPRGFRVVALSIVLGGSALLLSGCSWSDALALGWPTGITPEAKLNRELWIGSVIASFAVGAIVWGLIFWTSAFHRKKATDTELPRQFGYNMPLELTLTVIPFLIISVLFYFTVVVQERMMHKDPNPEVVIDVTAFQWNWKFGYQKIAFADGSFDYDGADPERKEAMTSRPEGKDEHGIEKVGPIRGMTPEDRTYLNFDKIETLGTSSEIPVLVLPAGKRIEFVLNSADVIHGFWVPEFLFKRDVLPEPKANNSDNVFQVSEIQQTGAFVGRCTEMCGTFHAMMNFEVRVVEPNDFKAYIDQRNAGKTNAEALAAINQPPLAITTEPFESRRGELVPQASK |
| Cytochrome c oxidase subunit 2 | L | 341 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MTPRGFRVVALSIVLGGSALLLSGCSWSDALALGWPTGITPEAKLNRELWIGSVIASFAVGAIVWGLIFWTSAFHRKKATDTELPRQFGYNMPLELTLTVIPFLIISVLFYFTVVVQERMMHKDPNPEVVIDVTAFQWNWKFGYQKIAFADGSFDYDGADPERKEAMTSRPEGKDEHGIEKVGPIRGMTPEDRTYLNFDKIETLGTSSEIPVLVLPAGKRIEFVLNSADVIHGFWVPEFLFKRDVLPEPKANNSDNVFQVSEIQQTGAFVGRCTEMCGTFHAMMNFEVRVVEPNDFKAYIDQRNAGKTNAEALAAINQPPLAITTEPFESRRGELVPQASK |
| MSMEG_4693 | R | 79 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MSTALTHGLIGGVPLVLFAVLALIFLTRKGPHPDTYKMSDPWTHAPILWAAEEPREHGHGGHGHDSHGVVIGGGASGKW |
| MSMEG_4693 | N | 79 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MSTALTHGLIGGVPLVLFAVLALIFLTRKGPHPDTYKMSDPWTHAPILWAAEEPREHGHGGHGHDSHGVVIGGGASGKW |
| Uncharacterized protein MSMEG_4692/MSMEI_4575 | T | 157 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MASGDIATVANAELDLPYGSALTSSGRISAVTEPGELSVHYPFPTMDLVVLDDALKYGSRAAKARFAVYIGPLGADTAATAREILANVPTPENAVLLAVSPDQRAIEVVYGADVKGRGIESAAPLGVSAAAASFKEGNLIDGLISAVRVMSAGVSPA |
| Uncharacterized protein MSMEG_4692/MSMEI_4575 | O | 157 | Mycobacterium Smegmatis (Strain Atcc 700084 / Mc(2)155) , Mycobacterium Smegmatis Mc2 155 | MASGDIATVANAELDLPYGSALTSSGRISAVTEPGELSVHYPFPTMDLVVLDDALKYGSRAAKARFAVYIGPLGADTAATAREILANVPTPENAVLLAVSPDQRAIEVVYGADVKGRGIESAAPLGVSAAAASFKEGNLIDGLISAVRVMSAGVSPA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-10-12 Deposition Author(s): Adelroth, P. , Benlekbir, S. , Brzezinski, P. , Fedotovskaya, O. , Guo, H. , Hogbom, M. , Kuang, Q. , Nitharwal, R.G. , Rubinstein, J.L. , Schafer, J. , Sjostrand, D. , Wiseman, B.