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FASTA Sequence PDB Format mmCIF Format
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6HQA

Molecular structure of promoter-bound yeast tfiid

PDB DOI: 10.2210/pdb6hqa/pdb

Classification: TRANSCRIPTION
Organism(s): Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115

Deposited: 2018-09-24
Deposition Author(s): Ben-Shem, A. , Kolesnikova, O. , Luo, J. , Papai, G. , Ranish, J. , Schultz, P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 7.1 Å

6hqa
Literature

Molecular structure of promoter-bound yeast tfiid

Ben-Shem, A. , Kolesnikova, O. , Luo, J. , Papai, G. , Ranish, J. , Schultz, P.

Primary Citation of Related Structures: 6HQA


Proteins
Molecule Chains Sequence Length Organism Sequence
Taf2 A 1756 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 MPAIPYDYPSIVSHGTPRKQKSQAKSSRATQNFKIAHQKVQLDVDLATQTVNGETELTIFATDPSLSKVRLDARCMQIHEVSVNLIKANFIAADFSRNDEFQNDPNNETLQRIHRYQKSYDTNSESIDIYQHHFYRSKFNPLYLDLNDHESPESVETLNTENLTVYLPENLRLRPHDLSNTYSPVSNYNSPLTSNSALMNSDRLYTPFVLKINYSLRVPKNGIIFNGGSHTTIEKTQWFCHTINNDIGCSASSWMPCIDNFYEKYTWELQLIVPKTVGDIGQTKPIGEKFSKQPNDNDDDDDDMIDSYQETDEEMTREIKVVLPDFESVKESPHILDHSKKVVSVQLYNNPVAAHHIGFFVGPFEQLPASTFKFQDQSHPKILDGEENNHSDFTAAVAARVYFLPSQKEMVLNTCLALYKNLDFYSKEFGSYPFSTYSMVFVDNLPTQYSSFAGISGISSEVLYDSGLVEPMFPVTELLSLIVAEQWSGINIVPKSLNDYWCVIGIAHFMAGQFLKKLFGFNNYKFVIKQRSDRICREDIGKAPLANQHFRFPVNDATDFKFIRLKAPLVLFILDRRMTKTDRSFGLSRVIPKIFAAAMSHDLYNGNCLSTSHFQHVCEKVAHHKLDSFFNNWVHNSGTPVLRVTQRFNKKRMFIEMGIRQVQGYELARSDASKSRKKDPVSFLNEACQHVDQTGPGVTSQIFTGPMTIRIHEADGTPYEHIVDLKEGFTKLDIQYNTKYKRIKKNKKDEELTKKDDSENTVNRLGDILSRSKDMQEWHLEDLSAEGEEARTQDAAEWIRIDADFEWICQIHLNQPDYMYQSQLQQDRDVEAQLDSVNFFSNSLRPNVFYSSVLVRTLMDNRYFYGVRCEAAKGLARLSKEENNHIGLHHLLKTLKQAFCYPMHDSHEDATTLINNPKNFLPLPNDFSDFQRLFIQETIPAALSTIKIKDSDLFLNLRRILLRLLQYNDNLNNDFNDCFYVCSLIRALANTIVEAGMVLQDHNEGISYYDEATSEDGTLDDRINNINRETVIEFNRRLQLDAADVSYHTCISDTILNEKVRLGSEGLINFRFPELLQFTQEKYSVYVRLAGFRGLLLLGGLKNKSILHYFFSTAKLELSALFKRGLIDHFLEAVGVAALFGTPSTLDDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKSRRDTYIRTTMKGAIQILKRDYAIGEGLTKELWSAVHSCLLSINLKRDIFDLIDLMYDAYDSYLVKIDSVSDKKVVTRVETVGDNTAIVKLYAKPRPKPSIVDSTSQKIEEKPKIKLGFKKSTEKSSGLSLKIKPKNVEVPEKVRPSKVKKEIEPPKENGPSEKKIPPPSSLVDDVTAPTPKVEDISNHRSKKQLLVKFGYKTANSRRFVRILLREKRLEFSSIPFNPKRYDVKLKYNRELLEERTRARVDEDQNSSSNSYSMSIDGKATNSGPVDSLNDDSIPTDGVAELKPEVEQRKKRVAKSTPKARQSRTIESDQDALISRSHKRQKFNPTINKPKSEEEIGENQTPEAGTQPTPKTKPKAKTKIKLKLKFLESMEMDEKTTGWRGGHVVEGLAGELEQLRARLEHHPQGQREPGGSELKTAALAQHDEAVDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPKVDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNGAQAPKVDANSAGKST
Subunit (90 kDa) of TFIID and SAGA complexes B 722 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 MKQEPGDSSDKSAPSGSITPQPKPPQQANVSNQQPQKPQQFSAADLNRIVLEYLNKKGYHKTESMLRMESSHIPAPPTNIPTPQTTNISRPTAPGRAPEYSDDPATIKRGYSILKSWCESSLDFYRPELEKFLYPVFVHCYLDLIARGYPSHAREFYDKFSKDHSVLHEYEISKLGGISLKEHLQENDVAKIFRSHKFKVLIGRTTFNLLLYFLNENDAVGGGVVLRLINQYIEPVITTEAIAVEREGELNLSEGIVELHTLNNTSIGGEQREISSVDAFNKKPVKLGKLQVDPEYSKELEAELKLKDEHEQAAQKKVSTTLLEEYRENFKVDPSDENNPSKDTLPLPLKSAQDLRNDIAMIQDSRAKIKLSAAQASLPSVCMYTFHNTNNDLTCLKFNDDSTMVASGFQDSFIKLWSIDGSPLRSLLKNDPYNQQNNDGVAVKGSRRLVGHSGAVYGVDFSPDNRYLISCSEDKTVRLWSLDTYTCLVSYKGHSSSVWDVKFSPMGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVEFHPNSTYLFTGSSDKTARMWDIARGECVRVFMGHSGAINCLAVSPDGRWLASAGEDSVVCLWDISTGRRIKAMRGHGRSSIYSLAFSREGTVLVSTGADNSVRVWDVKKNTNSPSAQPEPINDVTAQGIQKKTEDLRRRKEIVATNDHMSVYFTKKTPVYTVHFTRRNLCLAGGVFGG
Subunit (90 kDa) of TFIID and SAGA complexes C 722 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 MKQEPGDSSDKSAPSGSITPQPKPPQQANVSNQQPQKPQQFSAADLNRIVLEYLNKKGYHKTESMLRMESSHIPAPPTNIPTPQTTNISRPTAPGRAPEYSDDPATIKRGYSILKSWCESSLDFYRPELEKFLYPVFVHCYLDLIARGYPSHAREFYDKFSKDHSVLHEYEISKLGGISLKEHLQENDVAKIFRSHKFKVLIGRTTFNLLLYFLNENDAVGGGVVLRLINQYIEPVITTEAIAVEREGELNLSEGIVELHTLNNTSIGGEQREISSVDAFNKKPVKLGKLQVDPEYSKELEAELKLKDEHEQAAQKKVSTTLLEEYRENFKVDPSDENNPSKDTLPLPLKSAQDLRNDIAMIQDSRAKIKLSAAQASLPSVCMYTFHNTNNDLTCLKFNDDSTMVASGFQDSFIKLWSIDGSPLRSLLKNDPYNQQNNDGVAVKGSRRLVGHSGAVYGVDFSPDNRYLISCSEDKTVRLWSLDTYTCLVSYKGHSSSVWDVKFSPMGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVEFHPNSTYLFTGSSDKTARMWDIARGECVRVFMGHSGAINCLAVSPDGRWLASAGEDSVVCLWDISTGRRIKAMRGHGRSSIYSLAFSREGTVLVSTGADNSVRVWDVKKNTNSPSAQPEPINDVTAQGIQKKTEDLRRRKEIVATNDHMSVYFTKKTPVYTVHFTRRNLCLAGGVFGG
Subunit (60 kDa) of TFIID and SAGA complexes D 485 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 MSKNSQRSSIPTSHTLWSPSDTVKDAAESLGIFNLNEEAAKNLAMDIEYRIHEILDQASKFMRHGKRRTLHTSDIDRALKVLNLEPLYGYDVSRPLVFKEALVGAGQNLYYVDDDEVDFEKLINEPLPKVPRFSTFTAHWLAIEGVQPAIPQNPSPNDIKNILPINRGSMENMFSLINDEVKEDTNEEFTSTGPSVSSNISNQKQGLEVKPLVKHVLSRELQLYFDKIVEVLLNQEETKEAELLRNSALQSVRADPGLHQLVPYFIQFISETITKNLKNISLLSTMLELIYSLLMNESLFLEPYVHAIIPCILTLLLAKKIGNVDDELQKQQQLALRELSASLLERVIEDFGSSYSTLKPRITRTLLRAFVSVNNTTPGTQYGALLGLRGLGSEVIRIVVLGNVINWSSTFLEKLQQEDQVFLIDTLIETLRVLTKEGKLVKDMKTENGIDNERLKQRVGDLIADRIQACDDAQDIYWGIFFGEV
Subunit (60 kDa) of TFIID and SAGA complexes E 485 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 MSKNSQRSSIPTSHTLWSPSDTVKDAAESLGIFNLNEEAAKNLAMDIEYRIHEILDQASKFMRHGKRRTLHTSDIDRALKVLNLEPLYGYDVSRPLVFKEALVGAGQNLYYVDDDEVDFEKLINEPLPKVPRFSTFTAHWLAIEGVQPAIPQNPSPNDIKNILPINRGSMENMFSLINDEVKEDTNEEFTSTGPSVSSNISNQKQGLEVKPLVKHVLSRELQLYFDKIVEVLLNQEETKEAELLRNSALQSVRADPGLHQLVPYFIQFISETITKNLKNISLLSTMLELIYSLLMNESLFLEPYVHAIIPCILTLLLAKKIGNVDDELQKQQQLALRELSASLLERVIEDFGSSYSTLKPRITRTLLRAFVSVNNTTPGTQYGALLGLRGLGSEVIRIVVLGNVINWSSTFLEKLQQEDQVFLIDTLIETLRVLTKEGKLVKDMKTENGIDNERLKQRVGDLIADRIQACDDAQDIYWGIFFGEV
Subunit (17 kDa) of TFIID and SAGA complexes, involved in RNA polymerase II transcription initiation F 153 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 MTNEQAAIPRDVRLLHLIFATQNIYSYQDHVPLQLMDFAYRYTTGTLQDATIYSDHAHASGSHISNAGNAGTNAQLTTEDIRLAIAARTNYQFKPVPPKELLLELAAERNKKPLPAVIPTWGIRLPPEKYCLTGKDWVLEDEEEAVSYKKRKT
Taf8 G 75 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Histone-fold I 64 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Histone-fold H 68 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Subunit (61/68 kDa) of TFIID and SAGA complexes K 609 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs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
TFIID subunit (48 kDa) J 553 Komagataella Phaffii (Strain Gs115 / Atcc 20864) , Komagataella Phaffii Gs115 MSRKPERRRQPRLFSNDMRTLLFAYGDVQQPQLETIQALEDVMIVFMTDLCHEAMTYATYQGRKHKLKMEDFKFALRKDRLKLGRVEELMNKQKEIQEARKLFDSNEKETKDDDIEKKRRKEAKRAIKEAKKLKLSKGDTAFMSSTPDGSTPVDSGKRTSDQIDVGEYKRVKVERGNRSETVDSGLIDMSNSVGASLDIPTPDQLNPTNTGVQTPSLHQPGESISAHSLSLPGETSVGGSTGISRENTPQVRPDVSVSQSSSQLHQRNESFPGLSVSKSTTSLNKDTMFDNRKRLLGNNGANPNGQKSSDPEKLSDALTAAGVDLKEEESLLSQSTVIQQSRRQLSTLSSFLHPVHLATFMRRVMENNGLRNYVDHDTELLSYMSSACEGFMAGILTDSVILANHRKRPIKSKLKHSTTPRSDVSKVLRDIATKQKEREEQRVQKRVTLDIEGQEDDGKSKQDNEEVLHRAANATAMMMTSKSKKKKYSWMNADSGAQGGKTNSVLARGDSGIRYRDAREEPGLVLRDLLGALEGRRMCVANTVVKGYARMND
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-09-24
Deposition Author(s): Ben-Shem, A. , Kolesnikova, O. , Luo, J. , Papai, G. , Ranish, J. , Schultz, P.