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6GYB

Cryo-em structure of the bacteria-killing type iv secretion system core complex from xanthomonas citri

PDB DOI: 10.2210/pdb6gyb/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Xanthomonas Axonopodis Pv. Citri (Strain 306)

Deposited: 2018-06-28
Deposition Author(s): Costa, T.R.D. , Farah, C.S. , Sgro, G.G. , Waksman, G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.28 Å

6gyb
Literature

Cryo-em structure of the bacteria-killing type iv secretion system core complex from xanthomonas citri

Costa, T.R.D. , Farah, C.S. , Sgro, G.G. , Waksman, G.

Primary Citation of Related Structures: 6GYB


Proteins
Molecule Chains Sequence Length Organism Sequence
VirB7 A 139 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNPMYVSKLSLVLVAAALVGACATKPAPDFGGRWKHVNHFDEAPTEIPLYTSYTYQATPMDGTLKTMLERWAADSNMQLSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSANKLLVQPVPVSSGAKL
VirB7 D 139 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNPMYVSKLSLVLVAAALVGACATKPAPDFGGRWKHVNHFDEAPTEIPLYTSYTYQATPMDGTLKTMLERWAADSNMQLSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSANKLLVQPVPVSSGAKL
VirB7 G 139 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNPMYVSKLSLVLVAAALVGACATKPAPDFGGRWKHVNHFDEAPTEIPLYTSYTYQATPMDGTLKTMLERWAADSNMQLSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSANKLLVQPVPVSSGAKL
VirB7 J 139 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNPMYVSKLSLVLVAAALVGACATKPAPDFGGRWKHVNHFDEAPTEIPLYTSYTYQATPMDGTLKTMLERWAADSNMQLSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSANKLLVQPVPVSSGAKL
VirB7 M 139 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNPMYVSKLSLVLVAAALVGACATKPAPDFGGRWKHVNHFDEAPTEIPLYTSYTYQATPMDGTLKTMLERWAADSNMQLSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSANKLLVQPVPVSSGAKL
VirB7 P 139 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNPMYVSKLSLVLVAAALVGACATKPAPDFGGRWKHVNHFDEAPTEIPLYTSYTYQATPMDGTLKTMLERWAADSNMQLSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSANKLLVQPVPVSSGAKL
VirB7 S 139 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNPMYVSKLSLVLVAAALVGACATKPAPDFGGRWKHVNHFDEAPTEIPLYTSYTYQATPMDGTLKTMLERWAADSNMQLSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSANKLLVQPVPVSSGAKL
VirB9 protein B 255 Xanthomonas Axonopodis Pv. Citri (Strain 306) MKLFNRYRVALLSALPLALCALSAAAQVVQEYEYAPDRIYQVRTGLGITTQVELSPNEKILDYSTGFTGGWELTRRENVFYLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFTYPKDTSFNNVADADTSKNGPLLNAKILKDRRYYYDYDYATRTKKSWLIPSRVYDDGKFTYINMDLTRFPTGNFPAVFAREKEHAEDFLVNTTVEGNTLIVHGTYPFLVVRHGDNVVGLRRNKQK
VirB9 protein E 255 Xanthomonas Axonopodis Pv. Citri (Strain 306) MKLFNRYRVALLSALPLALCALSAAAQVVQEYEYAPDRIYQVRTGLGITTQVELSPNEKILDYSTGFTGGWELTRRENVFYLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFTYPKDTSFNNVADADTSKNGPLLNAKILKDRRYYYDYDYATRTKKSWLIPSRVYDDGKFTYINMDLTRFPTGNFPAVFAREKEHAEDFLVNTTVEGNTLIVHGTYPFLVVRHGDNVVGLRRNKQK
VirB9 protein H 255 Xanthomonas Axonopodis Pv. Citri (Strain 306) MKLFNRYRVALLSALPLALCALSAAAQVVQEYEYAPDRIYQVRTGLGITTQVELSPNEKILDYSTGFTGGWELTRRENVFYLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFTYPKDTSFNNVADADTSKNGPLLNAKILKDRRYYYDYDYATRTKKSWLIPSRVYDDGKFTYINMDLTRFPTGNFPAVFAREKEHAEDFLVNTTVEGNTLIVHGTYPFLVVRHGDNVVGLRRNKQK
VirB9 protein K 255 Xanthomonas Axonopodis Pv. Citri (Strain 306) MKLFNRYRVALLSALPLALCALSAAAQVVQEYEYAPDRIYQVRTGLGITTQVELSPNEKILDYSTGFTGGWELTRRENVFYLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFTYPKDTSFNNVADADTSKNGPLLNAKILKDRRYYYDYDYATRTKKSWLIPSRVYDDGKFTYINMDLTRFPTGNFPAVFAREKEHAEDFLVNTTVEGNTLIVHGTYPFLVVRHGDNVVGLRRNKQK
VirB9 protein N 255 Xanthomonas Axonopodis Pv. Citri (Strain 306) MKLFNRYRVALLSALPLALCALSAAAQVVQEYEYAPDRIYQVRTGLGITTQVELSPNEKILDYSTGFTGGWELTRRENVFYLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFTYPKDTSFNNVADADTSKNGPLLNAKILKDRRYYYDYDYATRTKKSWLIPSRVYDDGKFTYINMDLTRFPTGNFPAVFAREKEHAEDFLVNTTVEGNTLIVHGTYPFLVVRHGDNVVGLRRNKQK
VirB9 protein Q 255 Xanthomonas Axonopodis Pv. Citri (Strain 306) MKLFNRYRVALLSALPLALCALSAAAQVVQEYEYAPDRIYQVRTGLGITTQVELSPNEKILDYSTGFTGGWELTRRENVFYLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFTYPKDTSFNNVADADTSKNGPLLNAKILKDRRYYYDYDYATRTKKSWLIPSRVYDDGKFTYINMDLTRFPTGNFPAVFAREKEHAEDFLVNTTVEGNTLIVHGTYPFLVVRHGDNVVGLRRNKQK
VirB9 protein T 255 Xanthomonas Axonopodis Pv. Citri (Strain 306) MKLFNRYRVALLSALPLALCALSAAAQVVQEYEYAPDRIYQVRTGLGITTQVELSPNEKILDYSTGFTGGWELTRRENVFYLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFTYPKDTSFNNVADADTSKNGPLLNAKILKDRRYYYDYDYATRTKKSWLIPSRVYDDGKFTYINMDLTRFPTGNFPAVFAREKEHAEDFLVNTTVEGNTLIVHGTYPFLVVRHGDNVVGLRRNKQK
VirB10 protein C 406 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNSNIPNSPDERIQNHGGDEQHNGDHNERNNPYFARQQASAEPDLDANEPILRSSDIKRLNRKALVFLAAIAALLILAIFWLATQSGEDSAPPKPRTETVVAPALPQSMTAPVEEAPVPLAQQPSLPPLPPMPTDNSEEVSSAPERQRGPTLLERRILAESAANGGGVPGQLGAQPAPTQEDGPVTLAKPISNPDGLLVRGTYIRCILETRIISDFGGYTSCIVTEPVYSINGHNLLLPKGSKMLGQYSAGEPTSHRLQVVWDRVTTPTGLDVTLMGPGIDTLGSSGHPGNYNAHWGNKIASALFISLLSDAFKYAAAEYGPETTTIGVGSGIVTQQPFESNTARSMQQLAEQAVEKSGRRPATLTINQGTVLNVYVAKDVDFSAVLPKAAALEGLSAWSHPQFEK
VirB10 protein F 406 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNSNIPNSPDERIQNHGGDEQHNGDHNERNNPYFARQQASAEPDLDANEPILRSSDIKRLNRKALVFLAAIAALLILAIFWLATQSGEDSAPPKPRTETVVAPALPQSMTAPVEEAPVPLAQQPSLPPLPPMPTDNSEEVSSAPERQRGPTLLERRILAESAANGGGVPGQLGAQPAPTQEDGPVTLAKPISNPDGLLVRGTYIRCILETRIISDFGGYTSCIVTEPVYSINGHNLLLPKGSKMLGQYSAGEPTSHRLQVVWDRVTTPTGLDVTLMGPGIDTLGSSGHPGNYNAHWGNKIASALFISLLSDAFKYAAAEYGPETTTIGVGSGIVTQQPFESNTARSMQQLAEQAVEKSGRRPATLTINQGTVLNVYVAKDVDFSAVLPKAAALEGLSAWSHPQFEK
VirB10 protein I 406 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNSNIPNSPDERIQNHGGDEQHNGDHNERNNPYFARQQASAEPDLDANEPILRSSDIKRLNRKALVFLAAIAALLILAIFWLATQSGEDSAPPKPRTETVVAPALPQSMTAPVEEAPVPLAQQPSLPPLPPMPTDNSEEVSSAPERQRGPTLLERRILAESAANGGGVPGQLGAQPAPTQEDGPVTLAKPISNPDGLLVRGTYIRCILETRIISDFGGYTSCIVTEPVYSINGHNLLLPKGSKMLGQYSAGEPTSHRLQVVWDRVTTPTGLDVTLMGPGIDTLGSSGHPGNYNAHWGNKIASALFISLLSDAFKYAAAEYGPETTTIGVGSGIVTQQPFESNTARSMQQLAEQAVEKSGRRPATLTINQGTVLNVYVAKDVDFSAVLPKAAALEGLSAWSHPQFEK
VirB10 protein L 406 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNSNIPNSPDERIQNHGGDEQHNGDHNERNNPYFARQQASAEPDLDANEPILRSSDIKRLNRKALVFLAAIAALLILAIFWLATQSGEDSAPPKPRTETVVAPALPQSMTAPVEEAPVPLAQQPSLPPLPPMPTDNSEEVSSAPERQRGPTLLERRILAESAANGGGVPGQLGAQPAPTQEDGPVTLAKPISNPDGLLVRGTYIRCILETRIISDFGGYTSCIVTEPVYSINGHNLLLPKGSKMLGQYSAGEPTSHRLQVVWDRVTTPTGLDVTLMGPGIDTLGSSGHPGNYNAHWGNKIASALFISLLSDAFKYAAAEYGPETTTIGVGSGIVTQQPFESNTARSMQQLAEQAVEKSGRRPATLTINQGTVLNVYVAKDVDFSAVLPKAAALEGLSAWSHPQFEK
VirB10 protein O 406 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNSNIPNSPDERIQNHGGDEQHNGDHNERNNPYFARQQASAEPDLDANEPILRSSDIKRLNRKALVFLAAIAALLILAIFWLATQSGEDSAPPKPRTETVVAPALPQSMTAPVEEAPVPLAQQPSLPPLPPMPTDNSEEVSSAPERQRGPTLLERRILAESAANGGGVPGQLGAQPAPTQEDGPVTLAKPISNPDGLLVRGTYIRCILETRIISDFGGYTSCIVTEPVYSINGHNLLLPKGSKMLGQYSAGEPTSHRLQVVWDRVTTPTGLDVTLMGPGIDTLGSSGHPGNYNAHWGNKIASALFISLLSDAFKYAAAEYGPETTTIGVGSGIVTQQPFESNTARSMQQLAEQAVEKSGRRPATLTINQGTVLNVYVAKDVDFSAVLPKAAALEGLSAWSHPQFEK
VirB10 protein R 406 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNSNIPNSPDERIQNHGGDEQHNGDHNERNNPYFARQQASAEPDLDANEPILRSSDIKRLNRKALVFLAAIAALLILAIFWLATQSGEDSAPPKPRTETVVAPALPQSMTAPVEEAPVPLAQQPSLPPLPPMPTDNSEEVSSAPERQRGPTLLERRILAESAANGGGVPGQLGAQPAPTQEDGPVTLAKPISNPDGLLVRGTYIRCILETRIISDFGGYTSCIVTEPVYSINGHNLLLPKGSKMLGQYSAGEPTSHRLQVVWDRVTTPTGLDVTLMGPGIDTLGSSGHPGNYNAHWGNKIASALFISLLSDAFKYAAAEYGPETTTIGVGSGIVTQQPFESNTARSMQQLAEQAVEKSGRRPATLTINQGTVLNVYVAKDVDFSAVLPKAAALEGLSAWSHPQFEK
VirB10 protein U 406 Xanthomonas Axonopodis Pv. Citri (Strain 306) MNSNIPNSPDERIQNHGGDEQHNGDHNERNNPYFARQQASAEPDLDANEPILRSSDIKRLNRKALVFLAAIAALLILAIFWLATQSGEDSAPPKPRTETVVAPALPQSMTAPVEEAPVPLAQQPSLPPLPPMPTDNSEEVSSAPERQRGPTLLERRILAESAANGGGVPGQLGAQPAPTQEDGPVTLAKPISNPDGLLVRGTYIRCILETRIISDFGGYTSCIVTEPVYSINGHNLLLPKGSKMLGQYSAGEPTSHRLQVVWDRVTTPTGLDVTLMGPGIDTLGSSGHPGNYNAHWGNKIASALFISLLSDAFKYAAAEYGPETTTIGVGSGIVTQQPFESNTARSMQQLAEQAVEKSGRRPATLTINQGTVLNVYVAKDVDFSAVLPKAAALEGLSAWSHPQFEK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-06-28
Deposition Author(s): Costa, T.R.D. , Farah, C.S. , Sgro, G.G. , Waksman, G.