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6GV4
High-resolution cryo-em of fab-labeled human parechovirus 3
PDB DOI: 10.2210/pdb6gv4/pdb
Classification: VIRUS Organism(s): Homo Sapiens , Human Parechovirus 3
Deposited: 2018-06-20 Deposition Author(s): Butcher, S.J. , Domanska, A. , Flatt, J.W. , Geraets, J.A. , Jukonen, J.J.J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.8 Å
High-resolution cryo-em of fab-labeled human parechovirus 3
Butcher, S.J. , Domanska, A. , Flatt, J.W. , Geraets, J.A. , Jukonen, J.J.J.
Primary Citation of Related Structures: 6GV4
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (5'-R(*UP*GP*GP*UP*AP*UP*UP*U)-3') | d | 8 | NA | UGGUAUUU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| VP0 | A | 289 | Homo Sapiens , Human Parechovirus 3 | MESIKDLVNVATGAMDTLSLSNVETEVNNIISGNEVGGEIITKVADDASNLLGPNSFATTAQPENKDVVQATTTVNTTNLTQHPSAPTIPFTPDFKNVDNFHSMAYDITTGDKNPSKLIRLDTASWQTSYSRQYEITTVELPKSFWDDTRKPAYGQAKYFAAVRCGFHFQVQVNVNQGTAGSALVVYEPKPVIDSRQYLEFGSLTNLPHVLMNLAETTQADLCIPYVADTNYVKTDSSDLGQLRVYVWTPLSVPTGASNEVDVTVMGSLLQLDFQNPRPYGEDVEIYDN |
| VP1 | B | 229 | Homo Sapiens , Human Parechovirus 3 | NSWGSQMDLTDPLCIEDNMENCKQSISPNELGLTSAQDDGPLGNEKPNYFLNFRTMNVDIFTVSHTKVDNIFGRAWYVTSHDFNNGDTWRQKLTFPKEGHGMLSQFFAYFTGEINIHILYMAKQGFLRVAHTYDTEDNRKTFLSSNGVITIPAGEQMTLSVPFYSNKPLRTVRHDSALGFLMCRPSMHGTTRTTVEVYVSLRCPNFFFPVPAPKPTGSRATALSDESPY |
| VP3 | C | 256 | Homo Sapiens , Human Parechovirus 3 | GPNKANVSKFNKRKFLTASTKYKWTRTKVDIAEGPGTMNMANVLSTTGAQSVALVGERAFYDPRTAGSKSRFDDMIKIAQLFSVMSDNTTPSSSSGIDKYGYFDWAATVAPQNMVHRNVVTLDQFPNLNLFMNTYSYFRGSLIIRLSIYASTFNRGRLRMGFFPNCTHDTQLELDNAIYTICDIGSDNSFELTIPYSFSTWMRKTHGHQLGLFQVEVLNRLTYNSSSPNKVHCIVQGRLGDDAKFFCPTGSLVSFQ |
| AT12-015 antibody variable heavy | H | 121 | Homo Sapiens , Human Parechovirus 3 | EVQLLESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGGGDSRYYADSVKGRFTISRDNSKNTLYLQMNSLGAEDTALYYCAKRLGRVAEYYFDYWGQGTLVTVSP |
| AT12-015 antibody variable light | L | 113 | Homo Sapiens , Human Parechovirus 3 | DIQMTQSPSTLSASVGDRVTITCRTSQSISNWLAWYQQKPGKAPKLLIYQASTLENGVPSRFTGSGSGTEFSLTISSLQPDDFATYYCQQYNNYMALTFGGGTKVEIKRTVAA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2018-06-20 Deposition Author(s): Butcher, S.J. , Domanska, A. , Flatt, J.W. , Geraets, J.A. , Jukonen, J.J.J.