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FASTA Sequence PDB Format mmCIF Format
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6GSI

Feline calicivirus strain f9 bound to a soluble ectodomain fragment of feline junctional adhesion molecule a - leading to assembly of a portal structure at a unique three-fold axis.

PDB DOI: 10.2210/pdb6gsi/pdb

Classification: VIRUS
Organism(s): Feline Calicivirus Strain F9 , Felis Catus

Deposited: 2018-06-14
Deposition Author(s): Bhella, D. , Conley, M.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.75 Å

6gsi
Literature

Feline calicivirus strain f9 bound to a soluble ectodomain fragment of feline junctional adhesion molecule a - leading to assembly of a portal structure at a unique three-fold axis.

Bhella, D. , Conley, M.J.

Primary Citation of Related Structures: 6GSI


Proteins
Molecule Chains Sequence Length Organism Sequence
Capsid protein A 669 Feline Calicivirus Strain F9 , Felis Catus MCSTCANVLKYYNWDPHFRLVIDPNKFLSVGFCDNPLMCCYPELLPEFGTVWDCDQSPLQIYLESILGDDEWASTYEAIDPAVPPMHWDAAGKIFQPHPGVLMHHLIGEVAKAWDPNLPMFRLEADGDGSITAPEQGTPVGGVIAEPSAQMSAAADMATGKSVDSEWEAFFSFHTSVNWSTSETQGKILFKQSLGPLLNPYLEHLAKLYVAWSGSIDVRFSISGSGVFGGKLAAIVVPPGVDPVQSTSMLQYPHVLFDARQVEPVIFSIPDLRSTLYHLMSDTDTTSLVIMVYNDLINPYANDSNSSGCIVTVETKPGADFKFHLLKPPGSMLTHGSVPSDLIPKSSSLWIGNRHWTDITDFVIRPFVFQANRHFDFNQETAGWSTPRYRPITITISEKNGAKLGIGVATDYIVPGIPDGWPDTTIPEKLTPAGDYAITNKSGNDITTAAGYDGADVIVNNTNFKGMYICGSLQRAWGDKKISNTAFITTATKVDNAIEPSNVIDMTKIAVYQDTHVGKEVQTSDDTLSLLGYTGIGEQAIGSDRDRVVRISVLPETGARGGNHPIFYKNSIKLGYVIRSIDVFNSQILHTSRQLSLNHYLLPPDSFAVYRIIDSNGSWFDIGIDSDGFSFVGVSSIGKLEFPLTASYMGIQLAKIRLASNIRSSMTKL
Capsid protein B 669 Feline Calicivirus Strain F9 , Felis Catus MCSTCANVLKYYNWDPHFRLVIDPNKFLSVGFCDNPLMCCYPELLPEFGTVWDCDQSPLQIYLESILGDDEWASTYEAIDPAVPPMHWDAAGKIFQPHPGVLMHHLIGEVAKAWDPNLPMFRLEADGDGSITAPEQGTPVGGVIAEPSAQMSAAADMATGKSVDSEWEAFFSFHTSVNWSTSETQGKILFKQSLGPLLNPYLEHLAKLYVAWSGSIDVRFSISGSGVFGGKLAAIVVPPGVDPVQSTSMLQYPHVLFDARQVEPVIFSIPDLRSTLYHLMSDTDTTSLVIMVYNDLINPYANDSNSSGCIVTVETKPGADFKFHLLKPPGSMLTHGSVPSDLIPKSSSLWIGNRHWTDITDFVIRPFVFQANRHFDFNQETAGWSTPRYRPITITISEKNGAKLGIGVATDYIVPGIPDGWPDTTIPEKLTPAGDYAITNKSGNDITTAAGYDGADVIVNNTNFKGMYICGSLQRAWGDKKISNTAFITTATKVDNAIEPSNVIDMTKIAVYQDTHVGKEVQTSDDTLSLLGYTGIGEQAIGSDRDRVVRISVLPETGARGGNHPIFYKNSIKLGYVIRSIDVFNSQILHTSRQLSLNHYLLPPDSFAVYRIIDSNGSWFDIGIDSDGFSFVGVSSIGKLEFPLTASYMGIQLAKIRLASNIRSSMTKL
Capsid protein C 669 Feline Calicivirus Strain F9 , Felis Catus MCSTCANVLKYYNWDPHFRLVIDPNKFLSVGFCDNPLMCCYPELLPEFGTVWDCDQSPLQIYLESILGDDEWASTYEAIDPAVPPMHWDAAGKIFQPHPGVLMHHLIGEVAKAWDPNLPMFRLEADGDGSITAPEQGTPVGGVIAEPSAQMSAAADMATGKSVDSEWEAFFSFHTSVNWSTSETQGKILFKQSLGPLLNPYLEHLAKLYVAWSGSIDVRFSISGSGVFGGKLAAIVVPPGVDPVQSTSMLQYPHVLFDARQVEPVIFSIPDLRSTLYHLMSDTDTTSLVIMVYNDLINPYANDSNSSGCIVTVETKPGADFKFHLLKPPGSMLTHGSVPSDLIPKSSSLWIGNRHWTDITDFVIRPFVFQANRHFDFNQETAGWSTPRYRPITITISEKNGAKLGIGVATDYIVPGIPDGWPDTTIPEKLTPAGDYAITNKSGNDITTAAGYDGADVIVNNTNFKGMYICGSLQRAWGDKKISNTAFITTATKVDNAIEPSNVIDMTKIAVYQDTHVGKEVQTSDDTLSLLGYTGIGEQAIGSDRDRVVRISVLPETGARGGNHPIFYKNSIKLGYVIRSIDVFNSQILHTSRQLSLNHYLLPPDSFAVYRIIDSNGSWFDIGIDSDGFSFVGVSSIGKLEFPLTASYMGIQLAKIRLASNIRSSMTKL
Capsid protein D 669 Feline Calicivirus Strain F9 , Felis Catus MCSTCANVLKYYNWDPHFRLVIDPNKFLSVGFCDNPLMCCYPELLPEFGTVWDCDQSPLQIYLESILGDDEWASTYEAIDPAVPPMHWDAAGKIFQPHPGVLMHHLIGEVAKAWDPNLPMFRLEADGDGSITAPEQGTPVGGVIAEPSAQMSAAADMATGKSVDSEWEAFFSFHTSVNWSTSETQGKILFKQSLGPLLNPYLEHLAKLYVAWSGSIDVRFSISGSGVFGGKLAAIVVPPGVDPVQSTSMLQYPHVLFDARQVEPVIFSIPDLRSTLYHLMSDTDTTSLVIMVYNDLINPYANDSNSSGCIVTVETKPGADFKFHLLKPPGSMLTHGSVPSDLIPKSSSLWIGNRHWTDITDFVIRPFVFQANRHFDFNQETAGWSTPRYRPITITISEKNGAKLGIGVATDYIVPGIPDGWPDTTIPEKLTPAGDYAITNKSGNDITTAAGYDGADVIVNNTNFKGMYICGSLQRAWGDKKISNTAFITTATKVDNAIEPSNVIDMTKIAVYQDTHVGKEVQTSDDTLSLLGYTGIGEQAIGSDRDRVVRISVLPETGARGGNHPIFYKNSIKLGYVIRSIDVFNSQILHTSRQLSLNHYLLPPDSFAVYRIIDSNGSWFDIGIDSDGFSFVGVSSIGKLEFPLTASYMGIQLAKIRLASNIRSSMTKL
Junctional adhesion molecule A E 202 Feline Calicivirus Strain F9 , Felis Catus AVYTSEPDVRVPEDKPAKLSCSYSGFSNPRVEWKFAHGDITSLVCYKNKITASYADRVTFSHSGITFHSVTRKDTGTYTCMVSDDGGNTYGEVSVQLTVLVPPSKPTVHIPSSATIGSRAVLTCSEKDGSPPSEYYWFKDGVRMPLEPKGNRAFSNSSYSLNEKTGELVFDPVSAWDTGEYTCEAQNGYGMPMRSEAVRMEA
Junctional adhesion molecule A F 202 Feline Calicivirus Strain F9 , Felis Catus AVYTSEPDVRVPEDKPAKLSCSYSGFSNPRVEWKFAHGDITSLVCYKNKITASYADRVTFSHSGITFHSVTRKDTGTYTCMVSDDGGNTYGEVSVQLTVLVPPSKPTVHIPSSATIGSRAVLTCSEKDGSPPSEYYWFKDGVRMPLEPKGNRAFSNSSYSLNEKTGELVFDPVSAWDTGEYTCEAQNGYGMPMRSEAVRMEA
Junctional adhesion molecule A G 202 Feline Calicivirus Strain F9 , Felis Catus AVYTSEPDVRVPEDKPAKLSCSYSGFSNPRVEWKFAHGDITSLVCYKNKITASYADRVTFSHSGITFHSVTRKDTGTYTCMVSDDGGNTYGEVSVQLTVLVPPSKPTVHIPSSATIGSRAVLTCSEKDGSPPSEYYWFKDGVRMPLEPKGNRAFSNSSYSLNEKTGELVFDPVSAWDTGEYTCEAQNGYGMPMRSEAVRMEA
Junctional adhesion molecule A H 202 Feline Calicivirus Strain F9 , Felis Catus AVYTSEPDVRVPEDKPAKLSCSYSGFSNPRVEWKFAHGDITSLVCYKNKITASYADRVTFSHSGITFHSVTRKDTGTYTCMVSDDGGNTYGEVSVQLTVLVPPSKPTVHIPSSATIGSRAVLTCSEKDGSPPSEYYWFKDGVRMPLEPKGNRAFSNSSYSLNEKTGELVFDPVSAWDTGEYTCEAQNGYGMPMRSEAVRMEA
VP2 I 106 Feline Calicivirus Strain F9 , Felis Catus MNSILGLIDTVTNTIGKAQQIELDKAALGQQRELALKRMKLDHQALNNQVEQFNKILEQRVQGPIQSVRLARAAGFRVDPYSYTDQNFYDDQLNAIRLSYRNLFKN
VP2 J 106 Feline Calicivirus Strain F9 , Felis Catus MNSILGLIDTVTNTIGKAQQIELDKAALGQQRELALKRMKLDHQALNNQVEQFNKILEQRVQGPIQSVRLARAAGFRVDPYSYTDQNFYDDQLNAIRLSYRNLFKN
VP2 K 106 Feline Calicivirus Strain F9 , Felis Catus MNSILGLIDTVTNTIGKAQQIELDKAALGQQRELALKRMKLDHQALNNQVEQFNKILEQRVQGPIQSVRLARAAGFRVDPYSYTDQNFYDDQLNAIRLSYRNLFKN
VP2 L 106 Feline Calicivirus Strain F9 , Felis Catus MNSILGLIDTVTNTIGKAQQIELDKAALGQQRELALKRMKLDHQALNNQVEQFNKILEQRVQGPIQSVRLARAAGFRVDPYSYTDQNFYDDQLNAIRLSYRNLFKN
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-06-14
Deposition Author(s): Bhella, D. , Conley, M.J.