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6GDR

Dna binding with a minimal scaffold: structure-function analysis of lig e dna ligases

PDB DOI: 10.2210/pdb6gdr/pdb

Classification: LIGASE
Organism(s): Alteromonas Mediterranea

Deposited: 2018-04-24
Deposition Author(s): Grigic, M. , Leiros, H.K.S. , Williamson, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.33 Å

6gdr
Literature

Dna binding with a minimal scaffold: structure-function analysis of lig e dna ligases

Grigic, M. , Leiros, H.K.S. , Williamson, A.

Primary Citation of Related Structures: 6GDR


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*T)-3') b 21 NA TTCCGATAGTGGGGTCGCAAT
DNA c 10 NA ATTGCGACCC
DNA (5'-D(P*CP*AP*CP*TP*AP*TP*CP*GP*GP*AP*A)-3') d 11 NA CACTATCGGAA

Proteins
Molecule Chains Sequence Length Organism Sequence
DNA ligase A 297 Alteromonas Mediterranea GEDKHDIVDGLQLAKQYGHSRQDINIAEYWVSEKLDGIRARWDGTELRTRNNNKIDAPAWFTANWPKATIDGELWIARGQFERTASIVLSKLTSVAPQSVAGSLPRTESTVDAMTATHSLPSKRWAKVRFMAFDMPVAGQSFDSRLNMLNNLKEATPNPTFAVVSQFTLSSVNALEEKLEQVTLSGGEGLMLHHKKAFYHSGRSDKLIKVKQFEDAEAKVLAHFAGKGKFKGMMGSLLVETPAGVQFKLGTGFSEKERRAPPAVGSWVTFKFYGVTKNGKPRFASFLRVRPPSDLPK
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2018-04-24
Deposition Author(s): Grigic, M. , Leiros, H.K.S. , Williamson, A.