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6FTX

Structure of the chromatin remodelling enzyme chd1 bound to a ubiquitinylated nucleosome

PDB DOI: 10.2210/pdb6ftx/pdb

Classification: MOTOR PROTEIN
Organism(s): Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2018-02-25
Deposition Author(s): Hughes, A. , Norman, D.G. , Owen-Hughes, T. , Sundaramoorthy, R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.5 Å

6ftx
Literature

Structure of the chromatin remodelling enzyme chd1 bound to a ubiquitinylated nucleosome

Hughes, A. , Norman, D.G. , Owen-Hughes, T. , Sundaramoorthy, R.

Primary Citation of Related Structures: 6FTX


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3 A 97 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Histone H4 B 103 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 130 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESAKSAKSK
Histone H2A type 1 G 130 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESAKSAKSK
Histone H2B D 126 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPDPAKSAPAAKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H2B H 126 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MPDPAKSAPAAKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
Histone H3.3C E 110 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) AAAAAAAAAAAAAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Polyubiquitin-B N 76 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Polyubiquitin-B O 76 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Chromatin-remodeling ATPase W 878 Salmonella Enterica , Aspergillus Terreus Nih2624 , Grouper Iridovirus , Mucilaginibacter Paludis Dsm 18603 , Zaire Ebolavirus - Mayinga (Zaire, 1976) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) DFHGIDIVINHRLKTSKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFNQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYDMDSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLEKHATAYRAKLKSGEIKAENQPKDNPLTRLSLKKREKKAVLFNFKGVKSLNAESLLSRVEDLKYLKNLINSNYKDDPLKFSLGNNTPKPVQNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDKIFLKKVPGAIHLGRRVDYLLSFLRGGLN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (159-MER) i 159 NA ATACGCGGCCGCCCATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
DNA (160-MER) j 160 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTTCGGCACCGGGATTCTGATGGGCGGCCGCGTAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-02-25
Deposition Author(s): Hughes, A. , Norman, D.G. , Owen-Hughes, T. , Sundaramoorthy, R.