PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

6FML

Cryoem structure ino80core nucleosome complex

PDB DOI: 10.2210/pdb6fml/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct

Deposited: 2018-01-31
Deposition Author(s): Eustermann, S. , Hopfner, K. , Kostrewa, D. , Schall, K. , Strauss, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.34 Å

6fml
Literature

Cryoem structure ino80core nucleosome complex

Eustermann, S. , Hopfner, K. , Kostrewa, D. , Schall, K. , Strauss, M.

Primary Citation of Related Structures: 6FML


Proteins
Molecule Chains Sequence Length Organism Sequence
RuvB-like helicase A 462 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MVQISEVRGNTRDHRTAAHTHIKGLGLNSSGIAEKQAAGFVGQCAAREACGVVVDLIKAHKMAGRGVLLAGGPGTGKTALALAISQELGTKIPFCPITGSEIYSTEVKKTEVLMENFRRAIGLRVRETKDVYEGEVTEMTPEEAENPLGGYGKTISTLLIGLKSARGQKKLRLDPSIYEAIQKERVQVGDVIYIETNTGACKRVGRSDAYATEFDLEAEEYVPIPKGEVHKKKEIVQDVTLHDLDVANARPQGGQDIISMMGQLMKPKMTEITDKLRMEINKVVQKYINQGVAELIPGVLFIDEAHMLDIECFTYLNKALESPIAPIVVLASNRGIATIRGADDLKAAHGIPPDFLQRLLIIPTHPYEPDEIRRIVRIRAQTEGVQLTDAAVDRVAEHGVRISLRYCLQLLAPASILARVNGRTQVDVQDIAEAEELFLDARRSANILTSTGESGGLHGFIS
RuvB-like helicase B 462 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MVQISEVRGNTRDHRTAAHTHIKGLGLNSSGIAEKQAAGFVGQCAAREACGVVVDLIKAHKMAGRGVLLAGGPGTGKTALALAISQELGTKIPFCPITGSEIYSTEVKKTEVLMENFRRAIGLRVRETKDVYEGEVTEMTPEEAENPLGGYGKTISTLLIGLKSARGQKKLRLDPSIYEAIQKERVQVGDVIYIETNTGACKRVGRSDAYATEFDLEAEEYVPIPKGEVHKKKEIVQDVTLHDLDVANARPQGGQDIISMMGQLMKPKMTEITDKLRMEINKVVQKYINQGVAELIPGVLFIDEAHMLDIECFTYLNKALESPIAPIVVLASNRGIATIRGADDLKAAHGIPPDFLQRLLIIPTHPYEPDEIRRIVRIRAQTEGVQLTDAAVDRVAEHGVRISLRYCLQLLAPASILARVNGRTQVDVQDIAEAEELFLDARRSANILTSTGESGGLHGFIS
RuvB-like helicase C 462 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MVQISEVRGNTRDHRTAAHTHIKGLGLNSSGIAEKQAAGFVGQCAAREACGVVVDLIKAHKMAGRGVLLAGGPGTGKTALALAISQELGTKIPFCPITGSEIYSTEVKKTEVLMENFRRAIGLRVRETKDVYEGEVTEMTPEEAENPLGGYGKTISTLLIGLKSARGQKKLRLDPSIYEAIQKERVQVGDVIYIETNTGACKRVGRSDAYATEFDLEAEEYVPIPKGEVHKKKEIVQDVTLHDLDVANARPQGGQDIISMMGQLMKPKMTEITDKLRMEINKVVQKYINQGVAELIPGVLFIDEAHMLDIECFTYLNKALESPIAPIVVLASNRGIATIRGADDLKAAHGIPPDFLQRLLIIPTHPYEPDEIRRIVRIRAQTEGVQLTDAAVDRVAEHGVRISLRYCLQLLAPASILARVNGRTQVDVQDIAEAEELFLDARRSANILTSTGESGGLHGFIS
Histone H4 N 102 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 R 102 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 O 129 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1 S 129 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-C/E/F/G/I P 125 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B type 1-C/E/F/G/I T 125 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
RuvB-like helicase D 488 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MAAPLVTSVTETKELRGLNLIAAHSHIRGLGVDADTLEPRPSSQGLVGQEKARKAAAVVLEMIKQGKIAGRAVLIAGPPSTGKTAIAMGMAQSLGQDVPFTTLAASEIFSLEMSKTEALTQAFRKSIGVRIKEESEIMEGEVVEIQIDRSVTGGAKQGKLTIKTTDMEAIYDMGSKMIDAMTKERVMAGDIISIDKSSGKITKLGRSYARSRDYDAMGVDTKFLQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIRSEIRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSYINRALESDLAPIVIMASNRGVSRIRGTDYKSPHGLPLDFLDRVVIINTHPYTPDELRQILSIRAQEEEVDLTPDALALLTKIGQEAGLRYASNLITTSQLIAAKRRAKQVGVEDVQRSFKLFYDPARSVRFVQESEKRLIGNDGVVDFSYQGAAEAAAPTLPAAAPVDPVGGEKMDMS
RuvB-like helicase E 488 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MAAPLVTSVTETKELRGLNLIAAHSHIRGLGVDADTLEPRPSSQGLVGQEKARKAAAVVLEMIKQGKIAGRAVLIAGPPSTGKTAIAMGMAQSLGQDVPFTTLAASEIFSLEMSKTEALTQAFRKSIGVRIKEESEIMEGEVVEIQIDRSVTGGAKQGKLTIKTTDMEAIYDMGSKMIDAMTKERVMAGDIISIDKSSGKITKLGRSYARSRDYDAMGVDTKFLQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIRSEIRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSYINRALESDLAPIVIMASNRGVSRIRGTDYKSPHGLPLDFLDRVVIINTHPYTPDELRQILSIRAQEEEVDLTPDALALLTKIGQEAGLRYASNLITTSQLIAAKRRAKQVGVEDVQRSFKLFYDPARSVRFVQESEKRLIGNDGVVDFSYQGAAEAAAPTLPAAAPVDPVGGEKMDMS
RuvB-like helicase F 488 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MAAPLVTSVTETKELRGLNLIAAHSHIRGLGVDADTLEPRPSSQGLVGQEKARKAAAVVLEMIKQGKIAGRAVLIAGPPSTGKTAIAMGMAQSLGQDVPFTTLAASEIFSLEMSKTEALTQAFRKSIGVRIKEESEIMEGEVVEIQIDRSVTGGAKQGKLTIKTTDMEAIYDMGSKMIDAMTKERVMAGDIISIDKSSGKITKLGRSYARSRDYDAMGVDTKFLQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIRSEIRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSYINRALESDLAPIVIMASNRGVSRIRGTDYKSPHGLPLDFLDRVVIINTHPYTPDELRQILSIRAQEEEVDLTPDALALLTKIGQEAGLRYASNLITTSQLIAAKRRAKQVGVEDVQRSFKLFYDPARSVRFVQESEKRLIGNDGVVDFSYQGAAEAAAPTLPAAAPVDPVGGEKMDMS
Ino80 G 1856 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MDHFPTVLQRPPHFDEDGSAGTGRMRSNVVGNGSSNGARDDRGLRGGLRDILNPVGSASQTMPSASHGGTHSTPGTPGAPAPPRPHSSFSLRSPTQTGNHHASPYSAPTSSAAATSSQQPAGACSMLNNPFVTASTPFPPPPLQAPPSLASSRTSPSGLQHPPRSPLHAPPVYYPSDVRDRDLVRDQQTSLSFYDPTTDSKRDRDRERDRERERTGSDPESGAWSTSTQNSPPKIRDSYNYSRSPSFNNSGNYPSATGSYPPRSPVVRPHPAPPAGSMSPSAGSRTVTSPSLRHLAMPSTHSSQSASTVLPPLARTETPAPSARATPASNTPSRASGVMSFSNILSSSEPISKPRPTSPISLDNNPAMVARTEPAERPDKGEKDKKQSRKIIKTRVSDIKSAESTPKMTRKSAVKPETPTMLRIPTKRTANGSMKHKAFSADKEKTIRDIMDQFDYESIDETEFEDELLAWKERARRRRQEMNRRDFIHRQSRRSDFAETEALKLQIHANLGKARYSDLHYDEALQEVREQELWAEKERKKDMQRKRRREKSMAATLEQQAAALQKASQAEDEAERLKYIREAERANKKVQQTKYILQKGIKGPARNLPPIEPNLEGGTMATFSAENMEPGKVKGKGRGGRLKKSKEQKQAEKEQAELAQAAIDAGEEPPSKEETKIRIKLSKAKASAKEEAEKDKENKEPKQPKEPEKPVEEPKDPLELKFQSKGYNQIYDQIWRDLARKDVSKVFRLATDSYATKASNLKKTAILASKEAKRWQLRTNKGTKDLQARAKRVMRDMMGFWKRNEREERDLRKAAERLELENARKEEADREAARQRRKLNFLISQTELYSHFISKKIKTHEVERSTDHPDVATDEKDKIPEPTLNINVPEPTGPIAPKVTDFNSLDFDNEDESALQAAAMANAQNAIAEAQKKAREFNKDETKLDEDGEMNFQHPELTEFEVAQPKLLNCQLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTVQSISVMAYLAERYDIWGPFLVVAPASTLHNWQQEVSKFVPDFKVLPYWGTAADRKVLRKFWDRKHTTYKKDSPFHVMITSYQLVVSDVAYFQKMKWQYMILDEAQAIKSSQSSRWKCLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPSLFDSHDEFSEWFSKDIESHAQSNTKLNEDQLKRLHMILKPFMLRRVKKHVQKELGDKIEIDVFCELSYRQRAMYQSLRNQISIMDLIEKATVGDNEDSATLMNLVMQFRKVCNHPDLFERADTSSPFFCGHFAETGSFLREGTNVALGYSTRSLVEYRLPRLIWCDGGRLDKPGPGNLVAGFRSKYLNHMMNIWTPENIRSSLEGIENFTWLRFVDTSLQEAYRASHTDVFARAVDLASKQNRLGHMQIVYDEPEDKKWTPVHALFQICERENPKAVAEITTEGVLRDLMNIARVKYRELGLCRLEKAARPRASAPPIEVVCDSRSAVIERENIMFHPAMRKALFGPTPSEIKEASFGPRPVTLYPPRALLPAPDHDKQRFTNITVPSMARFVTDSGKLAKLDELLRELKEGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQTRPEIFIFLLSTRAGGLGINLTTADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRALQKEEVQRVVITGTGSVDFSGRRPPENRNRDIAMWLADDEQAEMIERREKELIESGEYDKIMQQRRKGGKRKRGAANGDTVPSLEDMYHEGEGHFDDNKGSGAATPVDADSLGRGGKRKKAGGSKKAKTTKQRLAIADGEIDDGEIDIDYKDDDDKGTDYKDDDDK
les2 H 491 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MSTRPRRHAAQRASQAITDLADRDRESDHSHGPISSRMSSFNSSSRSRLPGKGIASVSRSEAGGASDPEHIHLTVKLPSSKLRQATSSSGIKKAGSVGSSSSSSGGGKAAVKRARGGKRSRVLESSEEEEEENEVEVLGDEDEEEEEEEDEIEVREGEGYDEDEEDVEDEDEEMQDLGEEDADGEDDEMDVDAEGEEDADGDVNMDAGVVGARATTVRAVPPAIKVTKPPKESPSNGKAATASKANDNAVPVKRPAPDSDDESLSSLESEPEEEVNVAGGEDAEGEDDDAEGEVDAEGEEEEEEEEIEVADEDAEGEDVEQDEDEDEEEEDDDDEMISRAQTPDMSRLTARQRARLGEASGEYLKLSDEVQSKKHFTAEELSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQAPRTTRRAAQAAAAAEEAEEAAKQPKRPDPMMIRWVNNKMGSVVAVPEELLGTHAGVVFGAGPGKGLPAGKMVEEVS
Ies6 I 219 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MSNPDAQSAQAAHQALVEQLDLHSIHKTFRNPNWRPNQRRNKTIKAILGESQRKEASSTSAVATPRADDNGGGSGADTPANNDNNDGLSTSGTSTPANGNGSGAGTPASNGQPNLAQASRSLQKLVLEKSLASAQAPDKKAANGFASSAPTATYTNIESAPSLAPMKHYCDVTGLPAPYLDPKTRLRYHNKEIFAMIRNLPQGMGEQFLEARGAHTVLK
Actin related protein 5 J 770 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct MAPSAVAEPPPIPQRDEPWKRLPPPTVYPVKEARFEKYIPPQLDGRERALAQPPGQVAIVIDNGSHSVRAGWNFEDKPRLAIPPIMSKYRDRKMGKTFSFAGSDCYADTTARSHIRNAFEAGTGIVSNWDVMEHVLDYVFVKLGMNECDGAIDMPIVMTEAVANLPYSRKSMSEIIFECYGAPSLVYGIDSLFSFRHNQGQTGLVVSSSYSATHVIPVYNRKALLSQAIRLNWGGWHMAEYMLKLLKLKYYTGFPGKLNSSQTEHMVRDFCYVSLDYDRELAGYLDWTGLEDRERIVQYPYTEEVVVQKTEEELARIAERKKESGRRLQEQAAKMRLERLMKKEQELEYYKDIQRRMQGESKKEIKRLLDEAELKDEAALERVIRDLERSIKRARQKDLGEPEEEEVPDFSLLDVPDDQLDEAGLRQKRQQRLLKSNWEARQRAKAEKEAEKARLAEEARLDEERRKNDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNRKSXXXXXXXXXXXXXXXXXNPTGSGSRKRRRGGAGADQDDDFGADDADWGVYRSVAIGANKGDDSDDEEGXXXXXXXXXXXXXXXLRYDKTFSYDMTLDAQRDWSKSLLHAFRYGPRPFDPSSQAETHRVHLNVERIRVPEVLFQPAAIAGVDQAGLVEIAGDILCQRLPSLPGIQDAPDAFLRDVFLTGGNTLFQNFDERLRQGLMALLPVGAPLRVRRAQDAILDAWRGAAGWACTEEAKAAWITREEYLEKGGEYIKEHDLGNAFA
Histone H3.2 M 135 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 Q 135 Chaetomium Thermophilum (Strain Dsm 1495 / Cbs 144.50 / Imi 039719) , Chaetomium Thermophilum Var. Thermophilum Dsm 1495 , Homo Sapiens , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Nucleosomal DNA Strand 1 k 196 NA CTCGGAACACTATCCGACTGGCACCGGCAAGGTCGCTGTTCAATACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTTGCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCA
Nucleosomal DNA Strand 2 l 196 NA TGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGCAAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATTGAACAGCGACCTTGCCGGTGCCAGTCGGATAGTGTTCCGAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2018-01-31
Deposition Author(s): Eustermann, S. , Hopfner, K. , Kostrewa, D. , Schall, K. , Strauss, M.