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6FBU

Crystal structure of the dna repair enzyme endonuclease-viii (nei) from e. coli (e2q) in complex with ap-site containing dna substrate

PDB DOI: 10.2210/pdb6fbu/pdb

Classification: HYDROLASE
Organism(s): Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2017-12-19
Deposition Author(s): Golan, G. , Grollman, A.P. , Lansky, S. , Pomyalov, S. , Shoham, G. , Zharkov, D.O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2 Å

6fbu
Literature

Crystal structure of the dna repair enzyme endonuclease-viii (nei) from e. coli (e2q) in complex with ap-site containing dna substrate

Golan, G. , Grollman, A.P. , Lansky, S. , Pomyalov, S. , Shoham, G. , Zharkov, D.O.

Primary Citation of Related Structures: 6FBU


Proteins
Molecule Chains Sequence Length Organism Sequence
Endonuclease 8 A 262 Adineta Vaga , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) PQGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGCQH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*GP*GP*CP*TP*TP*CP*AP*TP*CP*CP*TP*G)-3') b 13 NA GGCTTCATCCTGG
DNA (5'-D(P*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3') c 13 NA CCAGGAXGAAGCC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2017-12-19
Deposition Author(s): Golan, G. , Grollman, A.P. , Lansky, S. , Pomyalov, S. , Shoham, G. , Zharkov, D.O.