6F2S
Cryoem structure of ageratum yellow vein virus (ayvv)
PDB DOI: 10.2210/pdb6f2s/pdb
Classification: VIRUS Organism(s): Ageratum Yellow Vein Virus
Deposited: 2017-11-27 Deposition Author(s): Fisher, C. , Hesketh, E.L. , Lomonossoff, G.P. , Potze, J. , Ranson, N.A. , Saunders, K. , Stanley, J.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.3 Å
Cryoem structure of ageratum yellow vein virus (ayvv)
Fisher, C. , Hesketh, E.L. , Lomonossoff, G.P. , Potze, J. , Ranson, N.A. , Saunders, K. , Stanley, J.
Primary Citation of Related Structures: 6F2S
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Capsid protein | A | 195 | Ageratum Yellow Vein Virus | PDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| Capsid protein | B | 195 | Ageratum Yellow Vein Virus | PDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| Capsid protein | F | 195 | Ageratum Yellow Vein Virus | PDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| Capsid protein | E | 195 | Ageratum Yellow Vein Virus | PDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| Capsid protein | D | 195 | Ageratum Yellow Vein Virus | PDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| Capsid protein | C | 195 | Ageratum Yellow Vein Virus | PDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| Capsid protein | K | 195 | Ageratum Yellow Vein Virus | PDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| Capsid protein | J | 195 | Ageratum Yellow Vein Virus | PDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| Capsid protein | G | 195 | Ageratum Yellow Vein Virus | PDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| coat protein subunit I | I | 203 | Ageratum Yellow Vein Virus | RLYRMYRTPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| coat protein subunit H | H | 218 | Ageratum Yellow Vein Virus | NRRRTWTNRPMYRKPRLYRMYRTPDVPKGCEGPCKVQSYEQRHDISHVGKVLCVSDVTRGNGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNTVMFYLVRDRRPFGTAMDFGQVFNMYDNEPSTATIKNDLRDRYQVLRKFTSTVTGGQYASKEQALVKKFMKINNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ssDNA loop | l | 7 | NA | CAACCAC |
| ssDNA loop | m | 7 | NA | CAACCAC |
| ssDNA loop | q | 7 | NA | CAACCAC |
| ssDNA loop | p | 7 | NA | CAACCAC |
| ssDNA loop | o | 7 | NA | CAACCAC |
| ssDNA loop | n | 7 | NA | CAACCAC |
| ssDNA loop | v | 7 | NA | CAACCAC |
| ssDNA loop | u | 7 | NA | CAACCAC |
| ssDNA loop | t | 7 | NA | CAACCAC |
| ssDNA loop | r | 7 | NA | CAACCAC |
| ssDNA loop associated with subunit H | s | 6 | NA | CAACCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2017-11-27 Deposition Author(s): Fisher, C. , Hesketh, E.L. , Lomonossoff, G.P. , Potze, J. , Ranson, N.A. , Saunders, K. , Stanley, J.